Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0796
         (697 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    22   4.2  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    22   5.5  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          22   5.5  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    21   9.6  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   9.6  

>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 523 TRSVHRMGNLPHLVY*ITYPMYSAIF 600
           TRS H M N  +L   +T+  +  +F
Sbjct: 11  TRSTHSMKNFKYLKVLVTFAHFICLF 36


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 375 YCNLHSYQSDRGCQYH 422
           Y N ++YQ    CQY+
Sbjct: 221 YSNYNNYQEGFSCQYY 236


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 375 YCNLHSYQSDRGCQYH 422
           Y N ++YQ    CQY+
Sbjct: 241 YSNYNNYQEGFSCQYY 256


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 14  VLINGSFKKGSKVIKCKRSGSILTWVQF 97
           +LI  S+K+    I C+    IL W+ F
Sbjct: 121 MLIWKSYKRTQIFITCELFFVILLWISF 148


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 660 WMNSAPXAAGVMLKNKMNGS 601
           WM  +   A V L NK NG+
Sbjct: 122 WMKESISFAKVKLTNKSNGN 141


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,868
Number of Sequences: 336
Number of extensions: 3387
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18322480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)