Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0796
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces pombe...    27   3.4  
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c...    26   5.9  

>SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 438 TFAHSNGTDNHDRSDKSEDYNTK 370
           T  H+N T NH + D S  Y T+
Sbjct: 11  TQEHNNETQNHKQEDHSNSYQTR 33


>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 502

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 101 CFHLLNLFSAVINVIGLSNKHVYRA 175
           C H+L   +A +N + LS +HV R+
Sbjct: 302 CLHILKGHAARVNHLSLSTEHVLRS 326


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,795,973
Number of Sequences: 5004
Number of extensions: 55065
Number of successful extensions: 118
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)