Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0796
         (697 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59495| Best HMM Match : RnaseH (HMM E-Value=0.0011)                 29   4.8  
SB_34322| Best HMM Match : FeS (HMM E-Value=3.4)                       29   4.8  
SB_54087| Best HMM Match : RnaseH (HMM E-Value=0.0029)                 28   6.3  
SB_53135| Best HMM Match : RnaseH (HMM E-Value=0.0016)                 28   6.3  
SB_55633| Best HMM Match : Rep_2 (HMM E-Value=1.7)                     28   8.3  

>SB_59495| Best HMM Match : RnaseH (HMM E-Value=0.0011)
          Length = 515

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = -2

Query: 519 VGSCHYLHECTRLTTKREKWR*LVRR----VTFAHSNGTDNHDRSDKSEDYNTKQTK 361
           +G+CH   EC  L    + W   +      +T AH  G DNH+   +S  ++++ T+
Sbjct: 319 MGTCHN-KECNALVV--QIWEFFISHNMLWITAAHIPGVDNHEADRESRHFHSQDTE 372


>SB_34322| Best HMM Match : FeS (HMM E-Value=3.4)
          Length = 554

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/43 (27%), Positives = 26/43 (60%), Gaps = 6/43 (13%)
 Frame = -2

Query: 453 LVRRVTFAHSNGTDNHDRSDK------SEDYNTKQTKKKILNI 343
           + R+ +F+H+NG+ ++D++DK       +D   K +   ++NI
Sbjct: 360 IARKESFSHNNGSTDNDKNDKIDTDSGEDDLTDKDSNLDVINI 402


>SB_54087| Best HMM Match : RnaseH (HMM E-Value=0.0029)
          Length = 318

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = -2

Query: 519 VGSCHYLHECTRLTTKREKWR*LVRR----VTFAHSNGTDNHDRSDKSEDYNTKQTK 361
           +G+CH   EC  L    + W   +      +T AH  G DNH+   +S  ++++ T+
Sbjct: 122 MGTCHN-KECNALVV--QIWEFCISHNMLWITAAHIPGVDNHEADRESRHFHSQDTE 175


>SB_53135| Best HMM Match : RnaseH (HMM E-Value=0.0016)
          Length = 515

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = -2

Query: 519 VGSCHYLHECTRLTTKREKWR*LVRR----VTFAHSNGTDNHDRSDKSEDYNTKQTK 361
           +G+CH   EC  L    + W   +      +T AH  G DNH+   +S  ++++ T+
Sbjct: 319 MGTCHN-KECNALVV--QIWEFCISHNMLWITAAHIPGVDNHEADRESRHFHSQDTE 372


>SB_55633| Best HMM Match : Rep_2 (HMM E-Value=1.7)
          Length = 211

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/39 (35%), Positives = 25/39 (64%)
 Frame = -2

Query: 471 REKWR*LVRRVTFAHSNGTDNHDRSDKSEDYNTKQTKKK 355
           R++W+ L++R+TF+       H +SD  +D++ K  KKK
Sbjct: 59  RKRWK-LLQRLTFS----AVKHVKSDNKDDFSKKGDKKK 92


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,465,402
Number of Sequences: 59808
Number of extensions: 401646
Number of successful extensions: 1732
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1731
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)