Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0796
         (697 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC050733-1|AAH50733.1|   99|Homo sapiens ATP-binding cassette, s...    30   9.1  
AY078405-1|AAL83711.1|   99|Homo sapiens up-regulated gene 7 pro...    30   9.1  

>BC050733-1|AAH50733.1|   99|Homo sapiens ATP-binding cassette,
           sub-family C (CFTR/MRP), member 6 protein.
          Length = 99

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 580 PMYSAIF*SVHLVF*HHTGRXRSRVHPYYRYKRWQSFTG 696
           PMY  +   ++L+F HH GR   R+ P ++ K   +  G
Sbjct: 41  PMYLWVLGPIYLLFIHHHGRGYLRMSPLFKAKMVAAIPG 79


>AY078405-1|AAL83711.1|   99|Homo sapiens up-regulated gene 7
           protein.
          Length = 99

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 580 PMYSAIF*SVHLVF*HHTGRXRSRVHPYYRYKRWQSFTG 696
           PMY  +   ++L+F HH GR   R+ P ++ K   +  G
Sbjct: 41  PMYLWVLGPIYLLFIHHHGRGYLRMSPLFKAKMVAAIPG 79


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,315,306
Number of Sequences: 237096
Number of extensions: 1922053
Number of successful extensions: 2929
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2929
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8007229802
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)