Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0796
         (697 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099927-3|AAZ32795.1|  893|Caenorhabditis elegans Hypothetical ...    29   4.2  
AF099927-1|AAZ32794.1|  955|Caenorhabditis elegans Hypothetical ...    29   4.2  
Z81062-1|CAB02945.2|  365|Caenorhabditis elegans Hypothetical pr...    28   7.3  
U50072-5|AAA93452.2|  351|Caenorhabditis elegans Pax (paired box...    27   9.7  

>AF099927-3|AAZ32795.1|  893|Caenorhabditis elegans Hypothetical
           protein T04C4.1b protein.
          Length = 893

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 23/84 (27%), Positives = 35/84 (41%)
 Frame = -1

Query: 688 MIASVCTGNMDELCSXGGRCDAKKQDERIKIWHYTWDMLFSILNVEGCPCDGPT*LSRQL 509
           ++ASVC+     + S   RC A +  +  K+W    +  FS  +V   P        +Q 
Sbjct: 542 VLASVCS-----VLSFFIRCSAVQHVDNDKMWEVPTEQPFSPCDVSNSPSTSCAHQHQQQ 596

Query: 508 PLFT*VYQTYHQTGEVAIARXARN 437
                 YQ   +T  VA+ R  RN
Sbjct: 597 QQLKNGYQHPEETSSVAMMRRLRN 620


>AF099927-1|AAZ32794.1|  955|Caenorhabditis elegans Hypothetical
           protein T04C4.1a protein.
          Length = 955

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 23/84 (27%), Positives = 35/84 (41%)
 Frame = -1

Query: 688 MIASVCTGNMDELCSXGGRCDAKKQDERIKIWHYTWDMLFSILNVEGCPCDGPT*LSRQL 509
           ++ASVC+     + S   RC A +  +  K+W    +  FS  +V   P        +Q 
Sbjct: 603 VLASVCS-----VLSFFIRCSAVQHVDNDKMWEVPTEQPFSPCDVSNSPSTSCAHQHQQQ 657

Query: 508 PLFT*VYQTYHQTGEVAIARXARN 437
                 YQ   +T  VA+ R  RN
Sbjct: 658 QQLKNGYQHPEETSSVAMMRRLRN 681


>Z81062-1|CAB02945.2|  365|Caenorhabditis elegans Hypothetical
           protein F15A4.1 protein.
          Length = 365

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 598 IWHYTWDMLFSILNV 554
           IWHY + M+F ILN+
Sbjct: 132 IWHYAYTMIFGILNL 146


>U50072-5|AAA93452.2|  351|Caenorhabditis elegans Pax (paired box)
           transcriptionfactor protein 2 protein.
          Length = 351

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +3

Query: 375 YCNLHSYQSDRGCQYHCC 428
           YCNL  Y   R C   CC
Sbjct: 18  YCNLQQYHDSRVCLLKCC 35


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,394,282
Number of Sequences: 27780
Number of extensions: 308106
Number of successful extensions: 699
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)