Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0796
         (697 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62120.2 68416.m06980 tRNA synthetase class II (G, H, P and S...    28   6.8  
At3g62120.1 68416.m06979 tRNA synthetase class II (G, H, P and S...    28   6.8  
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ...    28   6.8  

>At3g62120.2 68416.m06980 tRNA synthetase class II (G, H, P and S)
           family protein similar to SP|P07814 Bifunctional
           aminoacyl-tRNA synthetase [Includes: Glutamyl-tRNA
           synthetase (EC 6.1.1.17) (Glutamate--tRNA ligase);
           Prolyl-tRNA synthetase (EC 6.1.1.15) (Proline--tRNA
           ligase)] {Homo sapiens}; contains Pfam profiles PF00587:
           tRNA synthetase class II core domain (G, H, P, S and T),
           PF03129: Anticodon binding domain
          Length = 530

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
 Frame = -1

Query: 685 IASVCTGNMDELCSXGGRCDAKKQDERIKIWHYT-WDMLFSILNVEGCPCD 536
           I   CT     LC  G R +   +D     W Y+ W+M    L +E  P D
Sbjct: 350 IYDACTATASALCEAGIRAEEDLRDNYSPGWKYSDWEMKGVPLRIEIGPRD 400


>At3g62120.1 68416.m06979 tRNA synthetase class II (G, H, P and S)
           family protein similar to SP|P07814 Bifunctional
           aminoacyl-tRNA synthetase [Includes: Glutamyl-tRNA
           synthetase (EC 6.1.1.17) (Glutamate--tRNA ligase);
           Prolyl-tRNA synthetase (EC 6.1.1.15) (Proline--tRNA
           ligase)] {Homo sapiens}; contains Pfam profiles PF00587:
           tRNA synthetase class II core domain (G, H, P, S and T),
           PF03129: Anticodon binding domain
          Length = 530

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
 Frame = -1

Query: 685 IASVCTGNMDELCSXGGRCDAKKQDERIKIWHYT-WDMLFSILNVEGCPCD 536
           I   CT     LC  G R +   +D     W Y+ W+M    L +E  P D
Sbjct: 350 IYDACTATASALCEAGIRAEEDLRDNYSPGWKYSDWEMKGVPLRIEIGPRD 400


>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 1003

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
 Frame = -2

Query: 429 HSNGTDNHDRSDKSEDYNTKQTKKKILNIIYVPKIQK*------PKPLRRPKGSKSINNK 268
           +S G  + D S    D      +KK+   +   K++K        KP+ R K  K I  K
Sbjct: 118 NSQGQSDKDTSIPETDEKVSPPEKKLEKPVERKKVEKPIERKQVEKPVERKKAEKPIELK 177

Query: 267 YIVKPF 250
            + KPF
Sbjct: 178 QVEKPF 183


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,347,978
Number of Sequences: 28952
Number of extensions: 279380
Number of successful extensions: 588
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)