Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0795
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0637 - 12491706-12492575,12492580-12492657                       29   2.8  
03_05_0170 + 21482962-21483018,21483133-21483183,21483313-214835...    27   8.6  
02_02_0104 - 6802017-6802352,6802756-6803650,6803839-6803988,680...    27   8.6  
01_03_0106 - 12607995-12608327,12608863-12609063                       27   8.6  

>02_02_0637 - 12491706-12492575,12492580-12492657
          Length = 315

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +3

Query: 6   RATPSPSTGCR*PSSTWSSSATGTRPR 86
           R TP   T C  P+S+ S SA  TRPR
Sbjct: 136 RTTPWLPTSCSSPTSSTSPSARATRPR 162


>03_05_0170 +
           21482962-21483018,21483133-21483183,21483313-21483500,
           21483587-21483671,21483848-21483902,21483998-21484041,
           21485045-21485113,21485207-21485307,21485396-21485452,
           21485540-21485636
          Length = 267

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +3

Query: 135 KSVFXKGFYDLVTKTFKSCLSLIY 206
           K+V  KG  DLVT+T K+C  LI+
Sbjct: 29  KNVEHKGQVDLVTETDKACEDLIF 52


>02_02_0104 -
           6802017-6802352,6802756-6803650,6803839-6803988,
           6804099-6804349
          Length = 543

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/12 (91%), Positives = 11/12 (91%)
 Frame = -1

Query: 88  PRGRVPVADELH 53
           PRGRVP ADELH
Sbjct: 381 PRGRVPGADELH 392


>01_03_0106 - 12607995-12608327,12608863-12609063
          Length = 177

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 502 RSPAXLPDQSASDVPQWKCSR*LTG 576
           RSP  LP  +  D+ Q+ C+R +TG
Sbjct: 43  RSPCLLPIATQHDIDQYVCTRWITG 67


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,379,079
Number of Sequences: 37544
Number of extensions: 192658
Number of successful extensions: 387
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)