Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0795
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14495| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.53 
SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_58269| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_40726| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   8.7  

>SB_14495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 315

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +2

Query: 17  LTIDGLPLTVLNVELICDRNAT 82
           L IDG P T++NVEL CD + T
Sbjct: 97  LMIDGTPCTIVNVELHCDYDVT 118


>SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1021

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 20/56 (35%), Positives = 25/56 (44%)
 Frame = +3

Query: 15  PSPSTGCR*PSSTWSSSATGTRPRGVSAQNHLNLKRLDTNKSVFXKGFYDLVTKTF 182
           PSP    + P S  +  A    P G S Q  LN    DT      +GF DL +K+F
Sbjct: 814 PSPGEPNKPPFSPSNHQAAFPTPAGFSTQKRLNNDSSDT--ETHPQGFMDLGSKSF 867


>SB_58269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 215

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 45  SSTWSSSATGTRPRGVSAQNHLNLK 119
           SS WSSS+TGT  R     +H + K
Sbjct: 191 SSVWSSSSTGTSTRSGETSSHSSCK 215


>SB_40726| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 10/56 (17%)
 Frame = +3

Query: 18  SPSTGCR*PSSTWSSS----------ATGTRPRGVSAQNHLNLKRLDTNKSVFXKG 155
           +P T CR PS  W +S          ATG  PRGVS +  +   R   +  ++ +G
Sbjct: 56  APGTNCRVPSPRWITSELAPSYERRTATGWTPRGVSWERQIRTVRNILDSLLYNQG 111


>SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2982

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +3

Query: 42   PSSTWSSSATGTRPRGVSAQNHLNLKRLDTNKSVFXKGF 158
            P ST SSS +  R R   AQ H  L+R  +  +   K F
Sbjct: 945  PPSTPSSSCSNARDRDTRAQRHQTLRRTSSIGTPRKKSF 983


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,963,923
Number of Sequences: 59808
Number of extensions: 212784
Number of successful extensions: 442
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)