Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0795
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g02080.1 68415.m00144 zinc finger (C2H2 type) family protein ...    28   4.1  
At4g04920.1 68417.m00715 expressed protein                             28   5.4  
At2g43620.1 68415.m05422 chitinase, putative similar to basic en...    27   7.2  

>At2g02080.1 68415.m00144 zinc finger (C2H2 type) family protein
           contains Pfam domain PF00096: Zinc finger, C2H2 type
          Length = 516

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 102 NHLNLKRLDTNKSVFXKGFYDLVTKTFKSCLSLIY 206
           +++NLK   TN S F  GF+   TK  ++ L  +Y
Sbjct: 323 DNINLKSSGTNNSFFNLGFFQENTKNSETSLPSLY 357


>At4g04920.1 68417.m00715 expressed protein 
          Length = 1250

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/26 (57%), Positives = 16/26 (61%)
 Frame = +3

Query: 6   RATPSPSTGCR*PSSTWSSSATGTRP 83
           +ATP  STG R P S  SSS TG  P
Sbjct: 358 QATPKISTGSRVPPSLSSSSWTGFAP 383


>At2g43620.1 68415.m05422 chitinase, putative similar to basic
           endochitinase CHB4 precursor SP:Q06209 from [Brassica
           napus]
          Length = 283

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +3

Query: 27  TGCR*PSSTWSSSATGTRPRGVSAQNHLNLKRLDTNKSVFXKGFYD-LVTKTFKSC 191
           TGCR  S   SSS T   P        LN    DT ++V    F+D +++K    C
Sbjct: 57  TGCR--SGPCSSSTTPIPPTPSGGAGGLNADPRDTIENVVTPAFFDGIMSKVGNGC 110


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,898,928
Number of Sequences: 28952
Number of extensions: 152628
Number of successful extensions: 331
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 331
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)