Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0794
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...   104   1e-23
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...   104   1e-23
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    27   1.9  
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual           27   2.6  
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    26   5.9  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    25   7.8  

>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score =  104 bits (249), Expect = 1e-23
 Identities = 46/79 (58%), Positives = 61/79 (77%)
 Frame = +3

Query: 267 EPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNA 446
           E +++GP  F+ +LDVGL RT+TG+RVFGAMKGA DGGL +PHS  RFPG+D E+++ + 
Sbjct: 133 EAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDD 192

Query: 447 EVHRAHIFGLHVAEYMRSL 503
           E  R +I+G HVAEYM  L
Sbjct: 193 ETLRKYIYGGHVAEYMEML 211



 Score = 82.2 bits (194), Expect = 6e-17
 Identities = 34/56 (60%), Positives = 45/56 (80%)
 Frame = +1

Query: 10  PKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTG 177
           PKYRL+VR SN+ VTCQ+  SR+ GD+++  A+S ELPRYG+K GL N+ AAY+TG
Sbjct: 47  PKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATG 102



 Score = 35.5 bits (78), Expect = 0.007
 Identities = 15/35 (42%), Positives = 24/35 (68%)
 Frame = +2

Query: 509 DDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIR 613
           DDE+ +++QFS  I  G+ +D +E IY +A+  IR
Sbjct: 214 DDEERYQKQFSGLIADGIESDQLEDIYAEAYAKIR 248


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score =  104 bits (249), Expect = 1e-23
 Identities = 46/79 (58%), Positives = 61/79 (77%)
 Frame = +3

Query: 267 EPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNA 446
           E +++GP  F+ +LDVGL RT+TG+RVFGAMKGA DGGL +PHS  RFPG+D E+++ + 
Sbjct: 133 EAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDD 192

Query: 447 EVHRAHIFGLHVAEYMRSL 503
           E  R +I+G HVAEYM  L
Sbjct: 193 ETLRKYIYGGHVAEYMEML 211



 Score = 82.2 bits (194), Expect = 6e-17
 Identities = 34/56 (60%), Positives = 45/56 (80%)
 Frame = +1

Query: 10  PKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTG 177
           PKYRL+VR SN+ VTCQ+  SR+ GD+++  A+S ELPRYG+K GL N+ AAY+TG
Sbjct: 47  PKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATG 102



 Score = 35.5 bits (78), Expect = 0.007
 Identities = 15/35 (42%), Positives = 24/35 (68%)
 Frame = +2

Query: 509 DDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIR 613
           DDE+ +++QFS  I  G+ +D +E IY +A+  IR
Sbjct: 214 DDEERYQKQFSGLIADGIESDQLEDIYAEAYAKIR 248


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +3

Query: 558 ESLQMLL--KPSTRKPMKPSVRVPSHKKKE 641
           ESL  +L  K    KP KP+V  PS+ KKE
Sbjct: 34  ESLPSILGEKSEVSKPFKPAVTDPSNAKKE 63


>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -3

Query: 202 EAVFVLIADQLNMLQHNLSDQPSHHNVATHV 110
           EAV + + D  + L  +LSD+ S+ ++A H+
Sbjct: 169 EAVVLRVIDPSSKLAEDLSDEQSYRSLAEHI 199


>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 318 SLHPNNI*MLLVHCRQVQHCILTCDIC 238
           S+HP +      + +Q+ HC L C++C
Sbjct: 364 SVHPFSYLPDSTNSKQLSHCALDCELC 390


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1258

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 417  YDAESKKFNAEVHRAHIFGLHVAEYMRSLEQMMRI 521
            Y  E +K+N   +R  I G H A  +R + QM R+
Sbjct: 1191 YVQEIQKYNVTDYRPRIVGFHKA--IRKIRQMQRM 1223


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,939,527
Number of Sequences: 5004
Number of extensions: 60671
Number of successful extensions: 205
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)