Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0794
(696 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679... 107 8e-24
01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626... 107 8e-24
05_06_0219 + 26479708-26479710,26481045-26481173,26481675-264818... 29 4.7
02_05_1285 - 35452249-35452604,35452702-35452789,35452908-354535... 28 6.2
01_07_0369 - 43111835-43111882,43112172-43112245,43112670-431127... 28 6.2
>01_06_1660 +
38966999-38967001,38967685-38967757,38967841-38967923,
38968042-38968168,38968260-38968339,38968428-38968544,
38968711-38968845,38969046-38969215,38969300-38969417
Length = 301
Score = 107 bits (257), Expect = 8e-24
Identities = 48/85 (56%), Positives = 65/85 (76%)
Frame = +3
Query: 255 EYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESK 434
+Y VEP D FR LDVGL RTTTG RVFGA+KGA+DGGL++PHS KRF G+ + K
Sbjct: 127 DYYVEPADERR-PFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEK 185
Query: 435 KFNAEVHRAHIFGLHVAEYMRSLEQ 509
+ ++++HR +I+G HVA+YMRS+ +
Sbjct: 186 QLDSDIHRKYIYGGHVADYMRSMAE 210
Score = 81.8 bits (193), Expect = 5e-16
Identities = 36/56 (64%), Positives = 45/56 (80%)
Frame = +1
Query: 10 PKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTG 177
PKYR + +NKD+T Q+ Y+ I GD ++ AAYSHELPRYG++VGLTNYAAAY TG
Sbjct: 48 PKYRFV---TNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTG 100
Score = 46.4 bits (105), Expect = 2e-05
Identities = 18/36 (50%), Positives = 27/36 (75%)
Frame = +2
Query: 509 DDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRA 616
++ + F+ FS+Y+K G+ AD +EA+YKK H AIRA
Sbjct: 211 EEPEKFQAHFSEYLKKGIDADGMEALYKKVHAAIRA 246
>01_06_1659 +
38961637-38961639,38962361-38962433,38962531-38962613,
38962732-38962858,38962950-38963029,38963112-38963228,
38963393-38963527,38963714-38963883,38963970-38964087
Length = 301
Score = 107 bits (257), Expect = 8e-24
Identities = 48/85 (56%), Positives = 65/85 (76%)
Frame = +3
Query: 255 EYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESK 434
+Y VEP D FR LDVGL RTTTG RVFGA+KGA+DGGL++PHS KRF G+ + K
Sbjct: 127 DYYVEPADERR-PFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEK 185
Query: 435 KFNAEVHRAHIFGLHVAEYMRSLEQ 509
+ ++++HR +I+G HVA+YMRS+ +
Sbjct: 186 QLDSDIHRKYIYGGHVADYMRSMAE 210
Score = 81.8 bits (193), Expect = 5e-16
Identities = 36/56 (64%), Positives = 45/56 (80%)
Frame = +1
Query: 10 PKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTG 177
PKYR + +NKD+T Q+ Y+ I GD ++ AAYSHELPRYG++VGLTNYAAAY TG
Sbjct: 48 PKYRFV---TNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTG 100
Score = 45.2 bits (102), Expect = 5e-05
Identities = 17/36 (47%), Positives = 27/36 (75%)
Frame = +2
Query: 509 DDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRA 616
++ + F+ FS+Y+K G+ AD +E++YKK H AIRA
Sbjct: 211 EEPEKFQAHFSEYLKKGIDADGMESLYKKVHAAIRA 246
>05_06_0219 + 26479708-26479710,26481045-26481173,26481675-26481818,
26481936-26482081,26482185-26482341,26482489-26482547,
26482787-26482946,26483020-26483169,26483279-26483415,
26483518-26483664,26483733-26483834,26483917-26483974,
26484084-26484185,26484322-26484379,26484717-26484775,
26486488-26486525,26486688-26486814,26486900-26487067,
26487879-26488010,26488089-26488198,26488273-26488333,
26488761-26488938,26489041-26489246,26489431-26489550,
26489631-26489729,26489968-26490156,26490291-26490430,
26491149-26491316,26491438-26491605,26491764-26491931,
26492250-26492417,26492533-26492700,26492853-26493020,
26493118-26493285,26493471-26493638,26493756-26493920,
26494679-26494850,26495012-26495175,26495296-26495405,
26495481-26495596,26495686-26495766,26495849-26496034,
26496203-26496547,26496637-26496777,26496869-26496916,
26497162-26497242,26497350-26497406,26497495-26497575,
26497675-26497757,26497842-26497968
Length = 2159
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/64 (25%), Positives = 32/64 (50%)
Frame = -2
Query: 512 HLFKTSHVFSNMQTKDVSPVYFSIELFGFCIIARESFDGMRNIEATVNSTLHSSKDTSTS 333
HL + +HV S + K ++ ++ ++ F A +++ +R+I V+ + S K T
Sbjct: 1995 HLLRANHVPSILIHKLLTQIFSMLKFLVFTQFADSAWEALRHIRQAVDFLVISLKPIRTW 2054
Query: 332 SGAC 321
S C
Sbjct: 2055 SEIC 2058
>02_05_1285 -
35452249-35452604,35452702-35452789,35452908-35453588,
35453639-35453749,35454012-35454047
Length = 423
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Frame = +3
Query: 234 HNRCHR*EYNVEPVDNGPGAFRCYLD--VGLARTTTGARVFGAMKGAVDGGLNVPHSIKR 407
HN Y +P DN G RC ++ V L R + R F +D + + ++ R
Sbjct: 333 HNLVKLIIYGFQPDDNFVGYIRCMMEAAVNLVRISLYDRRFSDCCSDLDPKIKIKVALSR 392
Query: 408 FP 413
FP
Sbjct: 393 FP 394
>01_07_0369 -
43111835-43111882,43112172-43112245,43112670-43112754,
43112930-43113022,43113099-43113163,43114051-43114142,
43114240-43114527,43114642-43114706,43115421-43115502,
43115578-43115669,43116169-43116301,43116380-43116501,
43116624-43116725,43116853-43116892,43117032-43117103,
43117241-43117320,43117444-43117818
Length = 635
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -2
Query: 659 DRVFLKLFLLVGWNPHGWLHGLSC 588
D VFL L WNP +LH +C
Sbjct: 252 DAVFLSLIHAFSWNPATFLHAYTC 275
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,343,413
Number of Sequences: 37544
Number of extensions: 403308
Number of successful extensions: 1025
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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