Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0794
(696 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0) 158 3e-39
SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30) 91 1e-18
SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05) 30 1.6
SB_33613| Best HMM Match : PAS (HMM E-Value=0.0083) 30 1.6
SB_54490| Best HMM Match : AMP-binding (HMM E-Value=4.2039e-45) 29 2.7
SB_41487| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_49918| Best HMM Match : SGS (HMM E-Value=1.5e-07) 29 4.8
SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_33384| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22) 28 6.3
>SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)
Length = 328
Score = 158 bits (384), Expect = 3e-39
Identities = 87/144 (60%), Positives = 100/144 (69%), Gaps = 2/144 (1%)
Frame = +3
Query: 255 EYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESK 434
EYNVE VD PGAFRC+LDVGLART+TGARVFGA+KGAVDGGL +PHS+KRFPGYD+ESK
Sbjct: 161 EYNVESVDGSPGAFRCFLDVGLARTSTGARVFGALKGAVDGGLEIPHSMKRFPGYDSESK 220
Query: 435 KFNAEVHRAHIFGLHVAEYMRSL-EQMMRILSRDNSAST*N*ESLQMLLKPSTRKPMKPS 611
F+AEVHR HIFG HVAEYMRSL E+ R SA N + K +
Sbjct: 221 DFSAEVHRNHIFGKHVAEYMRSLAEEDEESYKRQFSAYIKNGVDADSI--EGIYKAAHQA 278
Query: 612 VRV-PSHKKKEFKKDSVKQKRLEQ 680
+R P HKK E KKD V+ KR +
Sbjct: 279 IRADPVHKKAE-KKD-VQLKRFHR 300
Score = 66.1 bits (154), Expect(2) = 4e-15
Identities = 25/40 (62%), Positives = 36/40 (90%)
Frame = +1
Query: 58 QVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTG 177
++AY++++GD ++ +AY+HELP +GVKVGLTNYAAAY TG
Sbjct: 95 RIAYAKLDGDRVLASAYAHELPNFGVKVGLTNYAAAYCTG 134
Score = 33.1 bits (72), Expect(2) = 4e-15
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = +1
Query: 10 PKYRLIVRLSNKDVTCQ 60
PKYR +VR++NKD+ CQ
Sbjct: 42 PKYRFVVRITNKDIICQ 58
>SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)
Length = 113
Score = 90.6 bits (215), Expect = 1e-18
Identities = 38/47 (80%), Positives = 43/47 (91%)
Frame = +3
Query: 255 EYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPH 395
EYNVE +D PGAFRC+LDVGLART+TGARVFGA+KGAVDGGL +PH
Sbjct: 66 EYNVESIDGSPGAFRCFLDVGLARTSTGARVFGALKGAVDGGLEIPH 112
Score = 75.4 bits (177), Expect = 4e-14
Identities = 31/39 (79%), Positives = 37/39 (94%)
Frame = +1
Query: 61 VAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTG 177
+AY+++EGD I+CAAY+HELPRYGVKVGLTNYAAAY TG
Sbjct: 1 IAYAKLEGDVIICAAYAHELPRYGVKVGLTNYAAAYCTG 39
>SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05)
Length = 791
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -3
Query: 385 LRPPSTAPFIAPKTRAPVVVRAKPTSK*HLNAPGPLS--TGST 263
+RP PF+ P +RAP A PT+ P P S TG T
Sbjct: 356 MRPAHIGPFLYPDSRAPFSPLASPTASSDSGHPSPGSSQTGKT 398
>SB_33613| Best HMM Match : PAS (HMM E-Value=0.0083)
Length = 624
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -3
Query: 385 LRPPSTAPFIAPKTRAPVVVRAKPTSK*HLNAPGPLS--TGST 263
+RP PF+ P +RAP A PT+ P P S TG T
Sbjct: 222 MRPAHIGPFLYPDSRAPFSPLASPTASSDSGHPSPGSSQTGKT 264
>SB_54490| Best HMM Match : AMP-binding (HMM E-Value=4.2039e-45)
Length = 565
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +3
Query: 369 VDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQMMRILSRDNSA 542
VDGG +RFP Y +E K + I + R+ + ++++ D SA
Sbjct: 87 VDGGTCASWRHQRFPNYASEEIKCRGVIRSLRIENKQAEQVQRATDGLLQVKGADGSA 144
>SB_41487| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 356
Score = 29.5 bits (63), Expect = 2.7
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 4/95 (4%)
Frame = +3
Query: 225 IHWHNRCHR*EYNVEP-VDNGPGAFRCYLDVGLARTTTGARVFGAMKGA---VDGGLNVP 392
IHW N C+ Y+++P G AF Y ++ + G V A V + VP
Sbjct: 156 IHWTNLCNSGIYSIDPDGSEGEPAFNVYCNM-TDKGGVGVTVISHDSEARTYVHDDVQVP 214
Query: 393 HSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMR 497
S R Y S K A++ F +H +Y+R
Sbjct: 215 GSYSRPVTYQGASWKQLAKLTE---FSIHCEQYIR 246
>SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1199
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = +3
Query: 558 ESLQMLLKPSTRKPMKPSVRVPSHKKKEFKKDSVKQKRLEQTP 686
+SL LKP+++ P+K ++R P + +KD K+++L P
Sbjct: 740 QSLDQNLKPASQPPVKLTIRRPD---RSSEKDKEKERKLNTEP 779
>SB_49918| Best HMM Match : SGS (HMM E-Value=1.5e-07)
Length = 227
Score = 28.7 bits (61), Expect = 4.8
Identities = 26/71 (36%), Positives = 38/71 (53%)
Frame = +3
Query: 426 ESKKFNAEVHRAHIFGLHVAEYMRSLEQMMRILSRDNSAST*N*ESLQMLLKPSTRKPMK 605
E + F AE RA + + E ++ LEQ + +LSR+ AST + + KPS+ KP
Sbjct: 13 ELRAFIAESSRARVKEVLQRELIK-LEQEVSLLSREKPAST-DQPNATAEEKPSSSKP-- 68
Query: 606 PSVRVPSHKKK 638
V V S+ KK
Sbjct: 69 --VTVSSYTKK 77
>SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +1
Query: 22 LIVRLSNKDVTCQVAYSRIEGD-HIVC 99
L++ LS +D+TC V YS G+ H +C
Sbjct: 108 LLLYLSKRDITCPVPYSSRNGELHTMC 134
>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3160
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +1
Query: 70 SRIEGDHIVCAAYSH-ELPRYGVKVGLTNYAAAY 168
++ GDH+ A+YSH ++ R+ V + L AAY
Sbjct: 133 AKYRGDHLDIASYSHQQIDRFAVLLDLWTNEAAY 166
>SB_33384| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 125
Score = 28.3 bits (60), Expect = 6.3
Identities = 8/25 (32%), Positives = 19/25 (76%)
Frame = +3
Query: 450 VHRAHIFGLHVAEYMRSLEQMMRIL 524
+ R H+FGL+++ Y+ L+ ++++L
Sbjct: 12 LRRVHVFGLYISMYIEVLKSLIKVL 36
>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
Length = 3445
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 430 DSAS*PGNLLME*GTLRPPSTAPFIAPKTRAPV 332
D+ P +M T+RPP T F+ T+APV
Sbjct: 1653 DTTVAPETTVMPDTTMRPPKTDVFVTEATKAPV 1685
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,478,624
Number of Sequences: 59808
Number of extensions: 483945
Number of successful extensions: 1471
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1456
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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