Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0794
(696 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC109370-1|AAI09371.1| 297|Homo sapiens ribosomal protein L5 pr... 144 4e-34
U14966-1|AAA85654.1| 297|Homo sapiens ribosomal protein L5 prot... 143 5e-34
BC132972-1|AAI32973.1| 297|Homo sapiens ribosomal protein L5 pr... 143 5e-34
BC132970-1|AAI32971.1| 297|Homo sapiens ribosomal protein L5 pr... 143 5e-34
AL162740-1|CAI22505.1| 297|Homo sapiens ribosomal protein L5 pr... 143 5e-34
AK222604-1|BAD96324.1| 297|Homo sapiens ribosomal protein L5 va... 143 5e-34
AB208980-1|BAD92217.1| 303|Homo sapiens ribosomal protein L5 va... 143 5e-34
U76609-1|AAB18361.1| 145|Homo sapiens ribosomal L5 protein prot... 103 6e-22
BC001882-1|AAH01882.1| 101|Homo sapiens RPL5 protein protein. 99 2e-20
AL162740-2|CAI22506.1| 126|Homo sapiens ribosomal protein L5 pr... 96 1e-19
AB065761-1|BAC05981.1| 314|Homo sapiens seven transmembrane hel... 31 3.0
X76061-1|CAA53661.1| 1139|Homo sapiens 130K protein protein. 30 6.9
X74594-1|CAA52671.1| 1082|Homo sapiens Rb2/p130 protein protein. 30 6.9
S67171-1|AAB29227.1| 1139|Homo sapiens p130 protein. 30 6.9
BX537767-1|CAD97830.1| 849|Homo sapiens hypothetical protein pr... 30 6.9
BC034490-1|AAH34490.1| 1139|Homo sapiens retinoblastoma-like 2 (... 30 6.9
>BC109370-1|AAI09371.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 144 bits (348), Expect = 4e-34
Identities = 63/83 (75%), Positives = 72/83 (86%)
Frame = +3
Query: 255 EYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESK 434
EYNVE +D PGAF CYLD GLARTTTG +VFGA+KGAVDGGL++PHS KRFPGYD+ESK
Sbjct: 129 EYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESK 188
Query: 435 KFNAEVHRAHIFGLHVAEYMRSL 503
+FNAEVHR HI G +VA+YMR L
Sbjct: 189 EFNAEVHRKHIMGQNVADYMRCL 211
Score = 105 bits (252), Expect = 2e-22
Identities = 44/56 (78%), Positives = 53/56 (94%)
Frame = +1
Query: 10 PKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTG 177
PKYR+IVR++N+D+ CQ+AY+RIEGD IVCAAY+HELP+YGVKVGLTNYAAAY TG
Sbjct: 47 PKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTG 102
Score = 52.8 bits (121), Expect = 1e-06
Identities = 22/43 (51%), Positives = 33/43 (76%)
Frame = +2
Query: 509 DDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRAGSIPQEE 637
+DED++K+QFS+YIK VT D +E +YKKAH AIR + +++
Sbjct: 214 EDEDAYKKQFSQYIKNSVTPDMMEEMYKKAHAAIRENPVYEKK 256
>U14966-1|AAA85654.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 143 bits (347), Expect = 5e-34
Identities = 63/83 (75%), Positives = 72/83 (86%)
Frame = +3
Query: 255 EYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESK 434
EYNVE +D PGAF CYLD GLARTTTG +VFGA+KGAVDGGL++PHS KRFPGYD+ESK
Sbjct: 129 EYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESK 188
Query: 435 KFNAEVHRAHIFGLHVAEYMRSL 503
+FNAEVHR HI G +VA+YMR L
Sbjct: 189 EFNAEVHRKHIMGQNVADYMRYL 211
Score = 103 bits (247), Expect = 6e-22
Identities = 43/56 (76%), Positives = 52/56 (92%)
Frame = +1
Query: 10 PKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTG 177
PKYR+IVR++N+D+ CQ+AY+RIEGD IVCA Y+HELP+YGVKVGLTNYAAAY TG
Sbjct: 47 PKYRMIVRVTNRDIICQIAYARIEGDMIVCARYAHELPKYGVKVGLTNYAAAYCTG 102
Score = 52.8 bits (121), Expect = 1e-06
Identities = 22/43 (51%), Positives = 33/43 (76%)
Frame = +2
Query: 509 DDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRAGSIPQEE 637
+DED++K+QFS+YIK VT D +E +YKKAH AIR + +++
Sbjct: 214 EDEDAYKKQFSQYIKNSVTPDMMEEMYKKAHAAIRENPVYEKK 256
>BC132972-1|AAI32973.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 143 bits (347), Expect = 5e-34
Identities = 63/83 (75%), Positives = 72/83 (86%)
Frame = +3
Query: 255 EYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESK 434
EYNVE +D PGAF CYLD GLARTTTG +VFGA+KGAVDGGL++PHS KRFPGYD+ESK
Sbjct: 129 EYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESK 188
Query: 435 KFNAEVHRAHIFGLHVAEYMRSL 503
+FNAEVHR HI G +VA+YMR L
Sbjct: 189 EFNAEVHRKHIMGQNVADYMRYL 211
Score = 105 bits (252), Expect = 2e-22
Identities = 44/56 (78%), Positives = 53/56 (94%)
Frame = +1
Query: 10 PKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTG 177
PKYR+IVR++N+D+ CQ+AY+RIEGD IVCAAY+HELP+YGVKVGLTNYAAAY TG
Sbjct: 47 PKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTG 102
Score = 52.8 bits (121), Expect = 1e-06
Identities = 22/43 (51%), Positives = 33/43 (76%)
Frame = +2
Query: 509 DDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRAGSIPQEE 637
+DED++K+QFS+YIK VT D +E +YKKAH AIR + +++
Sbjct: 214 EDEDAYKKQFSQYIKNSVTPDMMEEMYKKAHAAIRENPVYEKK 256
>BC132970-1|AAI32971.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 143 bits (347), Expect = 5e-34
Identities = 63/83 (75%), Positives = 72/83 (86%)
Frame = +3
Query: 255 EYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESK 434
EYNVE +D PGAF CYLD GLARTTTG +VFGA+KGAVDGGL++PHS KRFPGYD+ESK
Sbjct: 129 EYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESK 188
Query: 435 KFNAEVHRAHIFGLHVAEYMRSL 503
+FNAEVHR HI G +VA+YMR L
Sbjct: 189 EFNAEVHRKHIMGQNVADYMRYL 211
Score = 105 bits (252), Expect = 2e-22
Identities = 44/56 (78%), Positives = 53/56 (94%)
Frame = +1
Query: 10 PKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTG 177
PKYR+IVR++N+D+ CQ+AY+RIEGD IVCAAY+HELP+YGVKVGLTNYAAAY TG
Sbjct: 47 PKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTG 102
Score = 52.8 bits (121), Expect = 1e-06
Identities = 22/43 (51%), Positives = 33/43 (76%)
Frame = +2
Query: 509 DDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRAGSIPQEE 637
+DED++K+QFS+YIK VT D +E +YKKAH AIR + +++
Sbjct: 214 EDEDAYKKQFSQYIKNSVTPDMMEEMYKKAHAAIRENPVYEKK 256
>AL162740-1|CAI22505.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 143 bits (347), Expect = 5e-34
Identities = 63/83 (75%), Positives = 72/83 (86%)
Frame = +3
Query: 255 EYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESK 434
EYNVE +D PGAF CYLD GLARTTTG +VFGA+KGAVDGGL++PHS KRFPGYD+ESK
Sbjct: 129 EYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESK 188
Query: 435 KFNAEVHRAHIFGLHVAEYMRSL 503
+FNAEVHR HI G +VA+YMR L
Sbjct: 189 EFNAEVHRKHIMGQNVADYMRYL 211
Score = 105 bits (252), Expect = 2e-22
Identities = 44/56 (78%), Positives = 53/56 (94%)
Frame = +1
Query: 10 PKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTG 177
PKYR+IVR++N+D+ CQ+AY+RIEGD IVCAAY+HELP+YGVKVGLTNYAAAY TG
Sbjct: 47 PKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTG 102
Score = 52.8 bits (121), Expect = 1e-06
Identities = 22/43 (51%), Positives = 33/43 (76%)
Frame = +2
Query: 509 DDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRAGSIPQEE 637
+DED++K+QFS+YIK VT D +E +YKKAH AIR + +++
Sbjct: 214 EDEDAYKKQFSQYIKNSVTPDMMEEMYKKAHAAIRENPVYEKK 256
>AK222604-1|BAD96324.1| 297|Homo sapiens ribosomal protein L5
variant protein.
Length = 297
Score = 143 bits (347), Expect = 5e-34
Identities = 63/83 (75%), Positives = 72/83 (86%)
Frame = +3
Query: 255 EYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESK 434
EYNVE +D PGAF CYLD GLARTTTG +VFGA+KGAVDGGL++PHS KRFPGYD+ESK
Sbjct: 129 EYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESK 188
Query: 435 KFNAEVHRAHIFGLHVAEYMRSL 503
+FNAEVHR HI G +VA+YMR L
Sbjct: 189 EFNAEVHRKHIMGQNVADYMRYL 211
Score = 105 bits (252), Expect = 2e-22
Identities = 44/56 (78%), Positives = 53/56 (94%)
Frame = +1
Query: 10 PKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTG 177
PKYR+IVR++N+D+ CQ+AY+RIEGD IVCAAY+HELP+YGVKVGLTNYAAAY TG
Sbjct: 47 PKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTG 102
Score = 52.8 bits (121), Expect = 1e-06
Identities = 22/43 (51%), Positives = 33/43 (76%)
Frame = +2
Query: 509 DDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRAGSIPQEE 637
+DED++K+QFS+YIK VT D +E +YKKAH AIR + +++
Sbjct: 214 EDEDAYKKQFSQYIKNSVTPDMMEEMYKKAHAAIRENPVYEKK 256
>AB208980-1|BAD92217.1| 303|Homo sapiens ribosomal protein L5
variant protein.
Length = 303
Score = 143 bits (347), Expect = 5e-34
Identities = 63/83 (75%), Positives = 72/83 (86%)
Frame = +3
Query: 255 EYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESK 434
EYNVE +D PGAF CYLD GLARTTTG +VFGA+KGAVDGGL++PHS KRFPGYD+ESK
Sbjct: 136 EYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESK 195
Query: 435 KFNAEVHRAHIFGLHVAEYMRSL 503
+FNAEVHR HI G +VA+YMR L
Sbjct: 196 EFNAEVHRKHIMGQNVADYMRYL 218
Score = 105 bits (252), Expect = 2e-22
Identities = 44/56 (78%), Positives = 53/56 (94%)
Frame = +1
Query: 10 PKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTG 177
PKYR+IVR++N+D+ CQ+AY+RIEGD IVCAAY+HELP+YGVKVGLTNYAAAY TG
Sbjct: 54 PKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTG 109
Score = 48.8 bits (111), Expect = 2e-05
Identities = 22/43 (51%), Positives = 33/43 (76%)
Frame = +2
Query: 509 DDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRAGSIPQEE 637
+DED++K+QFS+YIK VT D +E +YKKAH AIR + +++
Sbjct: 221 EDEDAYKKQFSQYIKNSVTPD-MEEMYKKAHAAIRENPVYEKK 262
>U76609-1|AAB18361.1| 145|Homo sapiens ribosomal L5 protein
protein.
Length = 145
Score = 103 bits (247), Expect = 6e-22
Identities = 45/59 (76%), Positives = 53/59 (89%)
Frame = +3
Query: 327 TTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSL 503
TTTG +VFGA+KGAVDGGL++PHS KRFPGYD+ESK+FNAEVHR HI G +VA+YMR L
Sbjct: 1 TTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYL 59
Score = 52.8 bits (121), Expect = 1e-06
Identities = 22/43 (51%), Positives = 33/43 (76%)
Frame = +2
Query: 509 DDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRAGSIPQEE 637
+DED++K+QFS+YIK VT D +E +YKKAH AIR + +++
Sbjct: 62 EDEDAYKKQFSQYIKNSVTPDMMEEMYKKAHAAIRENPVYEKK 104
>BC001882-1|AAH01882.1| 101|Homo sapiens RPL5 protein protein.
Length = 101
Score = 98.7 bits (235), Expect = 2e-20
Identities = 41/52 (78%), Positives = 50/52 (96%)
Frame = +1
Query: 10 PKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAA 165
PKYR+IVR++N+D+ CQ+AY+RIEGD IVCAAY+HELP+YGVKVGLTNYAAA
Sbjct: 47 PKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAA 98
>AL162740-2|CAI22506.1| 126|Homo sapiens ribosomal protein L5
protein.
Length = 126
Score = 95.9 bits (228), Expect = 1e-19
Identities = 40/52 (76%), Positives = 49/52 (94%)
Frame = +1
Query: 22 LIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTG 177
+IVR++N+D+ CQ+AY+RIEGD IVCAAY+HELP+YGVKVGLTNYAAAY TG
Sbjct: 1 MIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTG 52
Score = 85.8 bits (203), Expect = 1e-16
Identities = 36/47 (76%), Positives = 41/47 (87%)
Frame = +3
Query: 255 EYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPH 395
EYNVE +D PGAF CYLD GLARTTTG +VFGA+KGAVDGGL++PH
Sbjct: 79 EYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPH 125
>AB065761-1|BAC05981.1| 314|Homo sapiens seven transmembrane helix
receptor protein.
Length = 314
Score = 31.5 bits (68), Expect = 3.0
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = -3
Query: 661 LTESFLNSFFLWDGTRTDGFMGFLVD-GFNSICSDS*FYVLAELSLERILIICSRLLMYS 485
+T L+ F D R+ + G ++ F +C S Y+LA ++ +R + ICS LL Y
Sbjct: 77 ITPKMLSGFLCRD--RSISYSGCMIQLFFFCVCVISECYMLAAMACDRYVAICSPLL-YR 133
Query: 484 ATCKPKM*ALCTSAL 440
P++ +L +A+
Sbjct: 134 VIMSPRVCSLLVAAV 148
>X76061-1|CAA53661.1| 1139|Homo sapiens 130K protein protein.
Length = 1139
Score = 30.3 bits (65), Expect = 6.9
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = -3
Query: 238 LCQCIRCQVQVFEAVF--VLIADQLNMLQHNLSDQPSHHNVATHVNKQRT 95
+ +C R Q Q V+ VLI + SD SH N T +NK RT
Sbjct: 912 IMRCYRTQPQARSQVYRSVLIKGKRKRRNSGSSDSRSHQNSPTELNKDRT 961
>X74594-1|CAA52671.1| 1082|Homo sapiens Rb2/p130 protein protein.
Length = 1082
Score = 30.3 bits (65), Expect = 6.9
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = -3
Query: 238 LCQCIRCQVQVFEAVF--VLIADQLNMLQHNLSDQPSHHNVATHVNKQRT 95
+ +C R Q Q V+ VLI + SD SH N T +NK RT
Sbjct: 855 IMRCYRTQPQARSQVYRSVLIKGKRKRRNSGSSDSRSHQNSPTELNKDRT 904
>S67171-1|AAB29227.1| 1139|Homo sapiens p130 protein.
Length = 1139
Score = 30.3 bits (65), Expect = 6.9
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = -3
Query: 238 LCQCIRCQVQVFEAVF--VLIADQLNMLQHNLSDQPSHHNVATHVNKQRT 95
+ +C R Q Q V+ VLI + SD SH N T +NK RT
Sbjct: 912 IMRCYRTQPQARSQVYRSVLIKGKRKRRNSGSSDSRSHQNSPTELNKDRT 961
>BX537767-1|CAD97830.1| 849|Homo sapiens hypothetical protein
protein.
Length = 849
Score = 30.3 bits (65), Expect = 6.9
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = -3
Query: 238 LCQCIRCQVQVFEAVF--VLIADQLNMLQHNLSDQPSHHNVATHVNKQRT 95
+ +C R Q Q V+ VLI + SD SH N T +NK RT
Sbjct: 622 IMRCYRTQPQARSQVYRSVLIKGKRKRRNSGSSDSRSHQNSPTELNKDRT 671
>BC034490-1|AAH34490.1| 1139|Homo sapiens retinoblastoma-like 2 (p130)
protein.
Length = 1139
Score = 30.3 bits (65), Expect = 6.9
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = -3
Query: 238 LCQCIRCQVQVFEAVF--VLIADQLNMLQHNLSDQPSHHNVATHVNKQRT 95
+ +C R Q Q V+ VLI + SD SH N T +NK RT
Sbjct: 912 IMRCYRTQPQARSQVYRSVLIKGKRKRRNSGSSDSRSHQNSPTELNKDRT 961
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,478,820
Number of Sequences: 237096
Number of extensions: 2211174
Number of successful extensions: 4992
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 4627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4975
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8007229802
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -