Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0794
         (696 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical pr...   105   4e-23
AF067610-1|AAC17538.2|  696|Caenorhabditis elegans Hypothetical ...    31   0.60 
Z75542-6|CAA99864.3|  552|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z75538-3|CAA99842.3|  552|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z93390-6|CAB07675.4|  816|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z93390-1|CAE46674.1|  540|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z80214-7|CAC42261.2|  816|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AF040643-12|AAB94964.2|  658|Caenorhabditis elegans Hypothetical...    27   9.7  

>Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical
           protein F54C9.5 protein.
          Length = 293

 Score =  105 bits (251), Expect = 4e-23
 Identities = 49/86 (56%), Positives = 62/86 (72%), Gaps = 1/86 (1%)
 Frame = +3

Query: 255 EYNVEPV-DNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAES 431
           +YNVE   D  P  F+  LD+GLARTTTG+++F  MKG  DGG+NVPHS  RF G+D ES
Sbjct: 129 DYNVEEEGDRAP--FKAVLDIGLARTTTGSKIFAVMKGVADGGINVPHSESRFFGFDQES 186

Query: 432 KKFNAEVHRAHIFGLHVAEYMRSLEQ 509
           K++NAE HR  I G HVA+YM  L++
Sbjct: 187 KEYNAEAHRDRILGKHVADYMTYLKE 212



 Score =  100 bits (240), Expect = 9e-22
 Identities = 44/56 (78%), Positives = 52/56 (92%)
 Frame = +1

Query: 10  PKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTG 177
           PKYRLIVR++NKDV  Q+AYS+IEGD +V +AYSHELPRYG+KVGLTNYAAAY+TG
Sbjct: 47  PKYRLIVRITNKDVVAQLAYSKIEGDVVVASAYSHELPRYGLKVGLTNYAAAYATG 102



 Score = 50.8 bits (116), Expect = 9e-07
 Identities = 21/44 (47%), Positives = 31/44 (70%)
 Frame = +2

Query: 509 DDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRAGSIPQEER 640
           +DED +KRQFSK++  G+ AD + A Y+K H AIRA + P  ++
Sbjct: 213 EDEDRYKRQFSKFLAAGLNADNLVATYQKVHSAIRADASPAAKK 256


>AF067610-1|AAC17538.2|  696|Caenorhabditis elegans Hypothetical
           protein F41A4.1 protein.
          Length = 696

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +3

Query: 261 NVEPVDNGPGAFRCYL-DVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKK 437
           N EP++   G F C+L       TT+G+R  G      +  L    + ++FPG    +  
Sbjct: 68  NAEPIEKKNGGFNCHLHSKSPVLTTSGSRTVGTKTCLENKCLKRSFAFEKFPGRSLVNSS 127

Query: 438 F 440
           F
Sbjct: 128 F 128


>Z75542-6|CAA99864.3|  552|Caenorhabditis elegans Hypothetical
           protein F55D12.5 protein.
          Length = 552

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 582 PSTRKPMKPSVRVPSHKKKEFKK 650
           P +R   KPSVR P+ K  E+KK
Sbjct: 505 PPSRHLPKPSVRTPAEKMDEYKK 527


>Z75538-3|CAA99842.3|  552|Caenorhabditis elegans Hypothetical
           protein F55D12.5 protein.
          Length = 552

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 582 PSTRKPMKPSVRVPSHKKKEFKK 650
           P +R   KPSVR P+ K  E+KK
Sbjct: 505 PPSRHLPKPSVRTPAEKMDEYKK 527


>Z93390-6|CAB07675.4|  816|Caenorhabditis elegans Hypothetical
           protein T23B5.3a protein.
          Length = 816

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 148 SDQPSHHNVATHVNKQRTQYGHLQSESRP 62
           SD P HH   +H + Q  Q  HLQ    P
Sbjct: 17  SDVPMHHVYPSHHHHQHYQLPHLQQHPHP 45


>Z93390-1|CAE46674.1|  540|Caenorhabditis elegans Hypothetical
           protein T23B5.3b protein.
          Length = 540

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 148 SDQPSHHNVATHVNKQRTQYGHLQSESRP 62
           SD P HH   +H + Q  Q  HLQ    P
Sbjct: 17  SDVPMHHVYPSHHHHQHYQLPHLQQHPHP 45


>Z80214-7|CAC42261.2|  816|Caenorhabditis elegans Hypothetical
           protein T23B5.3a protein.
          Length = 816

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 148 SDQPSHHNVATHVNKQRTQYGHLQSESRP 62
           SD P HH   +H + Q  Q  HLQ    P
Sbjct: 17  SDVPMHHVYPSHHHHQHYQLPHLQQHPHP 45


>AF040643-12|AAB94964.2|  658|Caenorhabditis elegans Hypothetical
           protein F14D2.9 protein.
          Length = 658

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 518 DSFKRQFSKYIKLGVTADAIEAIYKKAHE 604
           D   R  S+YIK   T+D IE + KK +E
Sbjct: 408 DDLVRVSSEYIKFPTTSDEIETMTKKFYE 436


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,532,902
Number of Sequences: 27780
Number of extensions: 353999
Number of successful extensions: 952
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)