Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0794
         (696 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S...   106   2e-23
At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) riboso...   105   2e-23
At5g65390.1 68418.m08224 arabinogalactan-protein (AGP7)                28   5.1  

>At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S
           ribosomal protein L5 GB:P49625 from [Oryza sativa]
          Length = 301

 Score =  106 bits (254), Expect = 2e-23
 Identities = 64/152 (42%), Positives = 94/152 (61%), Gaps = 13/152 (8%)
 Frame = +3

Query: 255 EYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESK 434
           +++VEP D+    FR  LDVGL RTTTG RVFGA+KGA+DGGL++PHS KRF G+  E+K
Sbjct: 129 DFSVEPTDSRR-PFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFHKENK 187

Query: 435 KFNAEVHRAHIFGLHVAEYMRSL-EQMMRILSRDNSA---ST*N*ESLQMLLK------- 581
           + +AE+HR +I+G HV+ YM+ L E     L    SA        ES++ L K       
Sbjct: 188 QLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAESIEELYKKVHAAIR 247

Query: 582 --PSTRKPMKPSVRVPSHKKKEFKKDSVKQKR 671
             P+ +K +KP+ +   HK+   KK + ++++
Sbjct: 248 ADPNPKKTVKPAPK--QHKRYNLKKLTYEERK 277



 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 33/56 (58%), Positives = 43/56 (76%)
 Frame = +1

Query: 10  PKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTG 177
           PKYR +VR +NKD+  Q+  + I GD +  +AY+HELP+YG+ VGLTNYAAAY TG
Sbjct: 47  PKYRFVVRFTNKDIVAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTG 102



 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 20/42 (47%), Positives = 28/42 (66%)
 Frame = +2

Query: 509 DDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRAGSIPQE 634
           D+ +  +  FS YIK GV A++IE +YKK H AIRA   P++
Sbjct: 213 DEPEKLQTHFSAYIKKGVEAESIEELYKKVHAAIRADPNPKK 254


>At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) ribosomal
           protein L5, rice
          Length = 301

 Score =  105 bits (253), Expect = 2e-23
 Identities = 48/83 (57%), Positives = 65/83 (78%)
 Frame = +3

Query: 255 EYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESK 434
           +++VEP D+    FR  LDVGL RTTTG RVFGA+KGA+DGGL++PHS KRF G+  E+K
Sbjct: 129 DFSVEPTDSRR-PFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFHKENK 187

Query: 435 KFNAEVHRAHIFGLHVAEYMRSL 503
           + +AE+HR +I+G HV+ YM+ L
Sbjct: 188 QLDAEIHRNYIYGGHVSNYMKLL 210



 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 33/56 (58%), Positives = 43/56 (76%)
 Frame = +1

Query: 10  PKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTG 177
           PKYR +VR +NKD+  Q+  + I GD +  +AY+HELP+YG+ VGLTNYAAAY TG
Sbjct: 47  PKYRFVVRFTNKDIVAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTG 102



 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 19/36 (52%), Positives = 25/36 (69%)
 Frame = +2

Query: 509 DDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRA 616
           D+ +  +  FS YIK GV A++IE +YKK H AIRA
Sbjct: 213 DEPEKLQTHFSAYIKKGVEAESIEEMYKKVHAAIRA 248


>At5g65390.1 68418.m08224 arabinogalactan-protein (AGP7)
          Length = 130

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = -3

Query: 379 PPSTAPFIAPKTRAPVVVRAKPTSK*HLNAPGPLSTGST 263
           PP+  P  AP T  P  V   PTS    +AP P S   T
Sbjct: 41  PPAATP--APTTTPPPAVSPAPTSSPPSSAPSPSSDAPT 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,491,846
Number of Sequences: 28952
Number of extensions: 322584
Number of successful extensions: 897
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)