Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0793
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    87   2e-18
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    25   7.8  

>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 87.4 bits (207), Expect = 2e-18
 Identities = 42/104 (40%), Positives = 63/104 (60%), Gaps = 2/104 (1%)
 Frame = +1

Query: 304 LSPNIEIGRI*PPSRITP--FNPFQIPLLNTIILIRSGVTVT*AHHSLIENNFSQTKQRL 477
           LSP  E+G + PP  I     +P ++PLLNT+IL+ SG ++T AH+SLI  N     + L
Sbjct: 116 LSPTFELGAVWPPVGIADKTIDPLEVPLLNTVILLTSGASLTYAHYSLIARNRENALKGL 175

Query: 478 FLTILLGFYFIFYKHMNI*KLLLQLADRIYGSTFFIATGFHGIH 609
           ++TI L F F+  +          ++D +YG++F+ ATG HGIH
Sbjct: 176 YMTIALSFLFLGGQAYEYWNAPFTISDSVYGASFYFATGLHGIH 219



 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 164 RDISREGTYQGKHTILVNKGLR*G 235
           RD+S E    G HT  V KGL+ G
Sbjct: 69  RDMSTEANIHGAHTKAVTKGLKIG 92


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -3

Query: 682 FRKGDYFKGPNIAKLIENKVPNYYHEFHEILLL*KKWIHKFYQPIVKE 539
           F  G+Y+   N  K  +N   NY+ +F +  +  +  + K Y  +VK+
Sbjct: 344 FETGNYYTLSNFEKYCDNFKKNYFSKFKDSEIT-EDIVEKEYWKLVKD 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,329,655
Number of Sequences: 5004
Number of extensions: 40951
Number of successful extensions: 86
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)