Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0793
         (696 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY113537-1|AAM29542.1|  559|Drosophila melanogaster RE61294p pro...    31   2.0  
AE014297-791|AAF54271.3|  559|Drosophila melanogaster CG8112-PA ...    31   2.0  

>AY113537-1|AAM29542.1|  559|Drosophila melanogaster RE61294p
           protein.
          Length = 559

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +1

Query: 490 LLGFYFIFYKHMNI*KLLLQLADRIYGSTFFIATGFHGIHGNNWELYFLLIWLY 651
           L GFY I +  +N    LL+  DR++   ++ +  + G +  NW +  +  WLY
Sbjct: 390 LCGFYLILHSWLNFTSELLRFGDRMFYKDWWTSHTYDGYY-RNWNV-VVHDWLY 441


>AE014297-791|AAF54271.3|  559|Drosophila melanogaster CG8112-PA
           protein.
          Length = 559

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +1

Query: 490 LLGFYFIFYKHMNI*KLLLQLADRIYGSTFFIATGFHGIHGNNWELYFLLIWLY 651
           L GFY I +  +N    LL+  DR++   ++ +  + G +  NW +  +  WLY
Sbjct: 390 LCGFYLILHSWLNFTSELLRFGDRMFYKDWWTSHTYDGYY-RNWNV-VVHDWLY 441


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,628,767
Number of Sequences: 53049
Number of extensions: 369408
Number of successful extensions: 562
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3046624548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)