Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0793
         (696 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07687.1 68415.m00937 cytochrome c oxidase subunit 3 identica...    92   4e-19
At4g32500.1 68417.m04626 potassium channel protein, putative sim...    28   5.1  

>At2g07687.1 68415.m00937 cytochrome c oxidase subunit 3 identical
           to cytochrome c oxidase subunit 3 (GI:15215914)
           [Arabidopsis thaliana]; similar to Cytochrome c oxidase
           polypeptide III (EC 1.9.3.1) (Swiss-Prot:P92514)
           [Arabidopsis thaliana]
          Length = 265

 Score = 91.9 bits (218), Expect = 4e-19
 Identities = 45/102 (44%), Positives = 61/102 (59%)
 Frame = +1

Query: 304 LSPNIEIGRI*PPSRITPFNPFQIPLLNTIILIRSGVTVT*AHHSLIENNFSQTKQRLFL 483
           L+P +EIG I PP  I   +P++IP LNT IL  SG  VT AHH+++     +    L  
Sbjct: 109 LAPAVEIGGIWPPKGIEVLDPWEIPFLNTPILPSSGAAVTWAHHAILAGKEKRAVYALVA 168

Query: 484 TILLGFYFIFYKHMNI*KLLLQLADRIYGSTFFIATGFHGIH 609
           T+LL   F  ++ M   +    ++D IYGSTFF+ATGFHG H
Sbjct: 169 TVLLALVFTGFQGMEYYQAPFTISDSIYGSTFFLATGFHGFH 210


>At4g32500.1 68417.m04626 potassium channel protein, putative
           similar to potassium channel [Solanum tuberosum]
           gi|1514649|emb|CAA60016; similar to AKT1 [Arabidopsis
           thaliana] gi|563112|gb|AAA96810; member of the 1 pore, 6
           transmembrane (1P/6TM- Shaker-type) K+ channel family,
           PMID:11500563
          Length = 880

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +1

Query: 538 LLLQLADRIYGS-TFFIATGFHGIHGNN-WELYFLLIWLYSDL 660
           LL++    +Y S T F  TG+  IHGNN  E  F+L ++  +L
Sbjct: 260 LLIRYVTAMYWSITTFSTTGYGDIHGNNAEERAFILFYMIFNL 302


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,444,290
Number of Sequences: 28952
Number of extensions: 189284
Number of successful extensions: 310
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 310
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)