Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0789
         (649 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    23   2.2  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    22   5.0  
AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    21   8.7  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   8.7  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   8.7  

>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 398 LLSRVMNLF*FYYNIFLTHYSL 463
           L++R +N   FYY+I    YS+
Sbjct: 387 LMARCLNTLIFYYHISTYEYSI 408


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
          orthologue protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 71 SIPSNNCMPNPANF 30
          S+PS NC P  A+F
Sbjct: 36 SMPSMNCSPQGASF 49


>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 16/62 (25%), Positives = 25/62 (40%)
 Frame = +2

Query: 332 ILLSTILSRVVVCCILAEDK*NLLSRVMNLF*FYYNIFLTHYSLCLIHTEKSRQVYVYYH 511
           I L+   +R+   C L ++K + +     L  FY+ IF    S  L        VY +  
Sbjct: 265 IALNDDYNRLCHLCFLLDEKLSYIILTSFLNNFYFIIFQVFESFYLHKATTLETVYYFIS 324

Query: 512 NG 517
            G
Sbjct: 325 LG 326


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 178 LTIRSSKESVSQEICNLLADQF 243
           L I   KE  S++  NL+ D+F
Sbjct: 332 LAIVPEKEESSRQAVNLICDKF 353


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 178 LTIRSSKESVSQEICNLLADQF 243
           L I   KE  S++  NL+ D+F
Sbjct: 332 LAIVPEKEESSRQAVNLICDKF 353


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,213
Number of Sequences: 336
Number of extensions: 3308
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)