Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0789
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    51   2e-07
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    28   1.0  
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    28   1.0  
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    27   1.8  
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    27   3.1  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    26   5.4  
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ...    25   9.4  

>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 50.8 bits (116), Expect = 2e-07
 Identities = 23/62 (37%), Positives = 37/62 (59%)
 Frame = +1

Query: 34  LAGFGMQLLDGIDPNPDNFVCAGIVHTKMQQVGCLMRLEPNKQAQMYRLTIRSSKESVSQ 213
           ++GF   +   +D    N V AGI+    Q VGCL+R+EPN +  + RL+IRS+  S++ 
Sbjct: 805 VSGFHWGICQNVDSIALNIVGAGIIRFGTQNVGCLLRIEPNYEQNLIRLSIRSTNTSIAN 864

Query: 214 EI 219
            +
Sbjct: 865 TL 866


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -3

Query: 137 KHPTCCIFVWTMPAHTKLSGLGSIPSNNCMPNPANFVLVPVKSS 6
           KHP+C  F       TKL   G  P+NN   + +NF+ V + ++
Sbjct: 536 KHPSCNCF---SHLQTKLIDSGPKPANNSYQHQSNFIGVVISTN 576


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -3

Query: 485 ISQYESNTNYSELEKYYNKTKINSLLYLGDFICLLLKCNILQLCSK 348
           I+  + + N+  + +YY K K +  LY+   +  L KCN+  L  K
Sbjct: 696 ITLLQQSDNHPNIVRYYCKQKSDQFLYI---VIELCKCNLSDLIEK 738


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +2

Query: 467 LIHTEKSRQVYVYYHNG 517
           L H  K+R+VY+YY NG
Sbjct: 291 LAHLVKNRKVYMYYENG 307


>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 223 NLLADQF*KYDRITHKIVDKHLNGVID 303
           N+L   F  YD+    I+ KH++G+ID
Sbjct: 693 NILERYFYYYDQHCESIIAKHISGLID 719


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 14/62 (22%), Positives = 25/62 (40%)
 Frame = -3

Query: 290  FKCLSTILCVILSYFQNWSASKLQIS*ETDSLLDRMVSLYI*ACLLGSSLIKHPTCCIFV 111
            F C+  ++  +L Y + WS SK  +       + R    +   C L S   +H    +  
Sbjct: 1527 FVCVDVVVFEVLGYLEGWSFSKTLLGFVAIISIHRFAHKFFIICFL-SREFRHDGANLAW 1585

Query: 110  WT 105
            W+
Sbjct: 1586 WS 1587


>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 494 PVLISQYESNTNYSELEKYYNKTKI 420
           PV++S+ +   NY +L++Y N   I
Sbjct: 294 PVVVSKVKFTRNYRDLQQYINPDNI 318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,674,610
Number of Sequences: 5004
Number of extensions: 54617
Number of successful extensions: 170
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)