Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0789
(649 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0296 + 24216284-24216428,24216631-24216745,24217321-242174... 31 0.60
01_06_0138 + 26865895-26865953,26866628-26867870 31 0.79
01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-33... 30 1.8
02_05_0366 - 28313190-28313601,28313759-28314225,28315044-283157... 28 5.6
12_01_0042 + 337131-337612,338727-338898,338996-339204,339414-33... 28 7.4
11_01_0043 + 328272-328753,329233-329298,330082-330253,330357-33... 28 7.4
06_01_0456 - 3249662-3249710,3249838-3250451,3250694-3250780,325... 27 9.7
>04_04_0296 +
24216284-24216428,24216631-24216745,24217321-24217411,
24217495-24217640,24217745-24217964,24218037-24218145,
24218273-24218441,24218546-24218720
Length = 389
Score = 31.5 bits (68), Expect = 0.60
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +1
Query: 37 AGFGMQLLDGIDPNPDNFVCAGIVHTKMQQVGCLMRL-EPNKQAQMYRLTIR 189
+ FG+ + D ID F+ AG +H K+ +V C++ P+ + Y+ TI+
Sbjct: 321 SAFGVTV-DFIDLELSRFIAAGKLHCKIDKVACVLETNRPDARNAFYQATIK 371
>01_06_0138 + 26865895-26865953,26866628-26867870
Length = 433
Score = 31.1 bits (67), Expect = 0.79
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 82 DNFVCAGIVHTKMQQVGCLMRLEPNKQAQMYRLTIRSSKESVSQ 213
D+ +C G+++ + G L +EP MY L SK S+ Q
Sbjct: 261 DSVICDGVLYCLIHSTGILGNIEPRHSIIMYDLIAGPSKASLMQ 304
>01_01_0047 +
334809-334877,334966-335074,335159-335299,336337-336498,
336577-336734,337180-337310,337385-337472,337587-337690,
338346-338444,339060-339116,339262-339337,339519-339602,
339969-340010,340128-340198,341516-341564,342370-342441,
343149-343286,343393-343473,344166-344353,344591-345188,
345274-345342,346729-346854,347048-347175,347986-348142,
348342-348388,348472-348535,348691-348765,349292-349414,
349797-349982,351179-351303,351390-351459,351974-352101,
352585-352726,353065-353163,353239-353285,353598-353652,
353758-353967,354686-354757,354836-354905,355231-355414,
355521-355644,355732-355863,356252-356317,356805-356852,
357572-357676,357728-357865,358097-358399,358482-358594,
359082-359148,359236-359310,359395-359517,359610-359618,
360156-360320,360401-360502,361545-361696,361794-361995,
362079-362126,362215-362298,362613-362657,363302-363385,
363890-363970,364044-364133,364217-364279,364824-364841,
365238-365378,365494-365550,366091-366185,366275-366383,
367067-367156,367308-367387,367480-367558,367742-367903,
368005-368136,368335-368469,368553-368618,369317-369457,
369575-369648,369685-369910
Length = 2905
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/45 (24%), Positives = 23/45 (51%)
Frame = -3
Query: 497 KPVLISQYESNTNYSELEKYYNKTKINSLLYLGDFICLLLKCNIL 363
+P+L+ E + K + K + +L+Y +C L+ C++L
Sbjct: 594 QPLLLELLEFTKGFMSSNKQFEKVDLPNLVYACSLVCNLIHCSLL 638
>02_05_0366 - 28313190-28313601,28313759-28314225,28315044-28315782,
28316548-28316615,28316693-28316757,28316922-28320162,
28320239-28320301,28320756-28320824,28321020-28321055,
28322035-28322280,28322531-28322569,28322695-28322816,
28322921-28323004,28323100-28323235,28323486-28323535,
28323620-28323756,28323863-28323951,28324847-28324954,
28325080-28325163,28325841-28325888,28326036-28326153,
28328262-28328347
Length = 2168
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 518 NHYDNKHKPVLISQYESNTNYSELEK 441
+H+ NKHK ++ + E N+N L+K
Sbjct: 1688 HHHSNKHKRIMSTNEEENSNSRSLKK 1713
>12_01_0042 +
337131-337612,338727-338898,338996-339204,339414-339572,
339914-340262
Length = 456
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -3
Query: 155 LGSSLIKHPTCCIFVWTMPAHTKLSGLGSIPSNNCM 48
LG+++ K+ T F + PAH+ S G +N C+
Sbjct: 319 LGANINKNKTRIFFAGSSPAHSWASNWGGDDNNKCL 354
>11_01_0043 +
328272-328753,329233-329298,330082-330253,330357-330565,
330779-330937,331279-331627
Length = 478
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -3
Query: 155 LGSSLIKHPTCCIFVWTMPAHTKLSGLGSIPSNNCM 48
LG+++ K+ T F + PAH+ S G +N C+
Sbjct: 341 LGANINKNKTRIFFAGSSPAHSWASNWGGDDNNKCL 376
>06_01_0456 -
3249662-3249710,3249838-3250451,3250694-3250780,
3251509-3252384,3252445-3252534,3252645-3252696,
3253117-3253168,3253265-3253363,3253444-3253528,
3253620-3253668,3253749-3253816,3254417-3254482,
3255690-3255741,3256685-3256767,3256915-3256946,
3257271-3257466,3258542-3258607,3259797-3259869,
3260010-3260224
Length = 967
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = +2
Query: 350 LSRVVVCCILAEDK*NLLSRVMNLF*FYYNIFLTHYSL--CLIHTEKSRQVYVYYHNGFF 523
LSR L + + ++ N Y+ IF+TH+ L C++ + + YH G F
Sbjct: 701 LSRAPDAAPLLQHQSTQQGQIFNRHLNYFTIFITHFVLLACVLQIQVEIRATQNYHQGQF 760
Query: 524 FKL 532
L
Sbjct: 761 IGL 763
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,723,565
Number of Sequences: 37544
Number of extensions: 294730
Number of successful extensions: 499
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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