Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0789
         (649 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47281| Best HMM Match : Adaptin_N (HMM E-Value=0)                   76   2e-14
SB_18521| Best HMM Match : ig (HMM E-Value=7.5e-11)                    30   1.9  
SB_5496| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.5  
SB_20698| Best HMM Match : Keratin_B2 (HMM E-Value=0.16)               27   9.9  

>SB_47281| Best HMM Match : Adaptin_N (HMM E-Value=0)
          Length = 949

 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 32/52 (61%), Positives = 44/52 (84%), Gaps = 1/52 (1%)
 Frame = +1

Query: 28   TKLAGFGMQLLDGIDPNPDNFVCAGIVHTKMQ-QVGCLMRLEPNKQAQMYRL 180
            TKL+GFG+ + +G+DPNP+NFVCAGI+  K+  QVGCL+RLEPN+QA+  R+
Sbjct: 869  TKLSGFGLAIQNGVDPNPENFVCAGIIKMKVAGQVGCLLRLEPNRQAKSSRI 920



 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = -3

Query: 92  TKLSGLGSIPSNNCMPNPANFV 27
           TKLSG G    N   PNP NFV
Sbjct: 869 TKLSGFGLAIQNGVDPNPENFV 890


>SB_18521| Best HMM Match : ig (HMM E-Value=7.5e-11)
          Length = 1033

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = -3

Query: 134 HPTCCIFVWTMPAHTKLSGLGSIPSNNCMPN---PANFVLVPVK 12
           HP C +  W  P+ +++ G  S+P  + + +     N+VLV VK
Sbjct: 584 HPDCKLLAWYKPSSSEVWGNSSVPCASTLAHLTGLGNYVLVDVK 627


>SB_5496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1352

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -3

Query: 518  NHYDNKHKPVLISQYESNTNYSELEKYYNKTKINSLLYLGD 396
            + YDN H P  +S      N S+ +KY++K +    L +G+
Sbjct: 1185 DEYDNAHAPQELSFERLQKNGSQAQKYWDKLRAKRNLSIGN 1225


>SB_20698| Best HMM Match : Keratin_B2 (HMM E-Value=0.16)
          Length = 376

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 121 QQVGCLMRLEPNKQAQMYRL 180
           +Q GC ++  PN+Q  +YRL
Sbjct: 259 KQTGCTLQTSPNRQRALYRL 278


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,915,438
Number of Sequences: 59808
Number of extensions: 368833
Number of successful extensions: 885
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)