Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0789
         (649 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28742-2|AAA68332.2|  925|Caenorhabditis elegans Adaptin, alpha ...   108   3e-24
Z81132-9|CAB03438.1|  320|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z70212-7|CAA94167.1|  332|Caenorhabditis elegans Hypothetical pr...    28   6.6  

>U28742-2|AAA68332.2|  925|Caenorhabditis elegans Adaptin, alpha chain
            (clathrinassociated complex) protein 2 protein.
          Length = 925

 Score =  108 bits (260), Expect = 3e-24
 Identities = 47/72 (65%), Positives = 61/72 (84%)
 Frame = +1

Query: 28   TKLAGFGMQLLDGIDPNPDNFVCAGIVHTKMQQVGCLMRLEPNKQAQMYRLTIRSSKESV 207
            ++L GFG  LL  +DPNPDN+VCAGI+HT+ QQ+G L+RLEPNKQA+MYRLTIRSSK++V
Sbjct: 854  SRLKGFGANLLTDVDPNPDNYVCAGIIHTQTQQIGTLIRLEPNKQAKMYRLTIRSSKDTV 913

Query: 208  SQEICNLLADQF 243
             Q + +LL +QF
Sbjct: 914  VQTLVDLLGNQF 925


>Z81132-9|CAB03438.1|  320|Caenorhabditis elegans Hypothetical
           protein T26E4.11 protein.
          Length = 320

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 464 CLIHTEKSRQVYVYYHNGFFFKLYINALGP 553
           CL  TE S Q+ +Y  N FFFK+  + L P
Sbjct: 165 CLNFTENSTQI-IYLENSFFFKIIPSILLP 193


>Z70212-7|CAA94167.1|  332|Caenorhabditis elegans Hypothetical
           protein R04D3.9 protein.
          Length = 332

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 461 NYSELEKYYNKTKINSLLYLGDFICLLLKCNILQL 357
           +YS L    N T +N L+ +    CLLL+  IL+L
Sbjct: 190 DYSVLPSRINATIVNGLVIILPITCLLLRRKILKL 224


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,494,273
Number of Sequences: 27780
Number of extensions: 296541
Number of successful extensions: 606
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)