Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0789
         (649 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex det...    24   1.1  
DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex det...    24   1.1  
DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex det...    24   1.1  
DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex det...    24   1.1  
DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex det...    24   1.1  
DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex det...    24   1.1  
DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex det...    24   1.1  
DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex det...    24   1.1  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    24   1.1  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    24   1.1  
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    23   1.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.5  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   5.9  

>DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
 Frame = -3

Query: 521 RNHYDNKHKPVLISQYES---NTNYSELEKYYNKTKINSLLYLGDFI 390
           R   +   +P +IS   S   N NY+     YNK   N L Y  ++I
Sbjct: 70  RTERERSKEPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYI 116


>DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
 Frame = -3

Query: 521 RNHYDNKHKPVLISQYES---NTNYSELEKYYNKTKINSLLYLGDFI 390
           R   +   +P +IS   S   N NY+     YNK   N L Y  ++I
Sbjct: 70  RTERERSKEPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYI 116


>DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
 Frame = -3

Query: 521 RNHYDNKHKPVLISQYES---NTNYSELEKYYNKTKINSLLYLGDFI 390
           R   +   +P +IS   S   N NY+     YNK   N L Y  ++I
Sbjct: 70  RTERERSKEPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYI 116


>DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
 Frame = -3

Query: 521 RNHYDNKHKPVLISQYES---NTNYSELEKYYNKTKINSLLYLGDFI 390
           R   +   +P +IS   S   N NY+     YNK   N L Y  ++I
Sbjct: 70  RTERERSKEPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYI 116


>DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
 Frame = -3

Query: 521 RNHYDNKHKPVLISQYES---NTNYSELEKYYNKTKINSLLYLGDFI 390
           R   +   +P +IS   S   N NY+     YNK   N L Y  ++I
Sbjct: 70  RTERERSKEPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYI 116


>DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
 Frame = -3

Query: 521 RNHYDNKHKPVLISQYES---NTNYSELEKYYNKTKINSLLYLGDFI 390
           R   +   +P +IS   S   N NY+     YNK   N L Y  ++I
Sbjct: 70  RTERERSKEPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYI 116


>DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
 Frame = -3

Query: 521 RNHYDNKHKPVLISQYES---NTNYSELEKYYNKTKINSLLYLGDFI 390
           R   +   +P +IS   S   N NY+     YNK   N L Y  ++I
Sbjct: 70  RTERERSKEPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYI 116


>DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
 Frame = -3

Query: 521 RNHYDNKHKPVLISQYES---NTNYSELEKYYNKTKINSLLYLGDFI 390
           R   +   +P +IS   S   N NY+     YNK   N L Y  ++I
Sbjct: 70  RTERERSKEPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYI 116


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
 Frame = -3

Query: 521 RNHYDNKHKPVLISQYES---NTNYSELEKYYNKTKINSLLYLGDFI 390
           R   +   +P +IS   S   N NY+     YNK   N L Y  ++I
Sbjct: 303 RTERERSKEPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYI 349


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
 Frame = -3

Query: 521 RNHYDNKHKPVLISQYES---NTNYSELEKYYNKTKINSLLYLGDFI 390
           R   +   +P +IS   S   N NY+     YNK   N L Y  ++I
Sbjct: 303 RTERERSKEPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYI 349


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
 Frame = -3

Query: 521 RNHYDNKHKPVLISQ---YESNTNYSELEKYYNKTKINSLLYLGDFI 390
           R   +   +P +IS      +N NY+     YNK   N L Y  ++I
Sbjct: 70  RTERERSKEPKIISNNNPLSNNYNYNNNYNNYNKHNYNKLYYNINYI 116


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +1

Query: 67  IDPNPDNFVCAGIVHTKMQQVGCLMRLEPNKQAQMY 174
           I P     +C+G+V  ++   G  M ++P K    Y
Sbjct: 763 ISPRSQLIICSGLVFVQILINGVWMIIDPAKAMHHY 798


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 158 NKLKCTD*PYDLVRSQFLKKSAT 226
           NK+  TD PY   R + +KK  +
Sbjct: 153 NKMDMTDPPYSEARFEEIKKEVS 175


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,256
Number of Sequences: 438
Number of extensions: 3736
Number of successful extensions: 14
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)