Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0789
         (649 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g22780.1 68418.m02663 adaptin family protein similar to SP|P1...    34   0.094
At5g22770.3 68418.m02661 adaptin family protein similar to SP|P1...    33   0.22 
At5g22770.2 68418.m02660 adaptin family protein similar to SP|P1...    33   0.22 
At5g22770.1 68418.m02659 adaptin family protein similar to SP|P1...    33   0.22 

>At5g22780.1 68418.m02663 adaptin family protein similar to SP|P18484
            adaptor-related protein complex 2 alpha 2 subunit
            (Alpha-adaptin C) (Clathrin assembly protein complex 2
            alpha-C large chain) {Rattus norvegicus}; contains Pfam
            profiles PF01602 Adaptin N terminal region, PF02883
            Adaptin C-terminal domain
          Length = 1013

 Score = 33.9 bits (74), Expect = 0.094
 Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
 Frame = +1

Query: 43   FGMQLLDGIDPNPDNFVCAGIVHTKMQ-QVGCLMRLE--PNKQAQMYRLTIRSSKESVSQ 213
            F + +  G+DPNP+N V +   +++    + CL R+E  P  + Q+ RLT+ S   +++ 
Sbjct: 903  FHVTICPGLDPNPNNLVASTTFYSETTGAMLCLARIETDPADRTQL-RLTVGSGDPTLTF 961

Query: 214  EICNLLADQ 240
            E+   + +Q
Sbjct: 962  ELKEFIKEQ 970


>At5g22770.3 68418.m02661 adaptin family protein similar to SP|P18484
            adaptor-related protein complex 2 alpha 2 subunit
            (Alpha-adaptin C) (Clathrin assembly protein complex 2
            alpha-C large chain) {Rattus norvegicus}; contains Pfam
            profiles PF01602 Adaptin N terminal region, PF02883
            Adaptin C-terminal domain
          Length = 1012

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 18/69 (26%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
 Frame = +1

Query: 43   FGMQLLDGIDPNPDNFVCAGIVHTKMQ-QVGCLMRLE--PNKQAQMYRLTIRSSKESVSQ 213
            F + +  G+DPNP+N V +   +++    + CL R+E  P  + Q+ R+T+ +   +++ 
Sbjct: 903  FHVTICPGLDPNPNNLVASTTFYSESTGAILCLARIETDPADRTQL-RMTVGTGDPTLTF 961

Query: 214  EICNLLADQ 240
            E+   + +Q
Sbjct: 962  ELKEFIKEQ 970


>At5g22770.2 68418.m02660 adaptin family protein similar to SP|P18484
            adaptor-related protein complex 2 alpha 2 subunit
            (Alpha-adaptin C) (Clathrin assembly protein complex 2
            alpha-C large chain) {Rattus norvegicus}; contains Pfam
            profiles PF01602 Adaptin N terminal region, PF02883
            Adaptin C-terminal domain
          Length = 1012

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 18/69 (26%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
 Frame = +1

Query: 43   FGMQLLDGIDPNPDNFVCAGIVHTKMQ-QVGCLMRLE--PNKQAQMYRLTIRSSKESVSQ 213
            F + +  G+DPNP+N V +   +++    + CL R+E  P  + Q+ R+T+ +   +++ 
Sbjct: 903  FHVTICPGLDPNPNNLVASTTFYSESTGAILCLARIETDPADRTQL-RMTVGTGDPTLTF 961

Query: 214  EICNLLADQ 240
            E+   + +Q
Sbjct: 962  ELKEFIKEQ 970


>At5g22770.1 68418.m02659 adaptin family protein similar to SP|P18484
            adaptor-related protein complex 2 alpha 2 subunit
            (Alpha-adaptin C) (Clathrin assembly protein complex 2
            alpha-C large chain) {Rattus norvegicus}; contains Pfam
            profiles PF01602 Adaptin N terminal region, PF02883
            Adaptin C-terminal domain
          Length = 1012

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 18/69 (26%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
 Frame = +1

Query: 43   FGMQLLDGIDPNPDNFVCAGIVHTKMQ-QVGCLMRLE--PNKQAQMYRLTIRSSKESVSQ 213
            F + +  G+DPNP+N V +   +++    + CL R+E  P  + Q+ R+T+ +   +++ 
Sbjct: 903  FHVTICPGLDPNPNNLVASTTFYSESTGAILCLARIETDPADRTQL-RMTVGTGDPTLTF 961

Query: 214  EICNLLADQ 240
            E+   + +Q
Sbjct: 962  ELKEFIKEQ 970


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,422,537
Number of Sequences: 28952
Number of extensions: 262272
Number of successful extensions: 550
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)