Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0787
(672 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 140 2e-34
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 140 2e-34
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 140 2e-34
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc... 45 1e-05
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos... 28 1.4
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce... 27 3.3
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 26 4.3
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 25 7.5
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 25 9.9
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 140 bits (339), Expect = 2e-34
Identities = 71/139 (51%), Positives = 88/139 (63%)
Frame = +2
Query: 254 LAPEGYYTGQFVYCGKXATLEVGNVMPVGAMPEGTIVCNLEEKXGDRGRLARASGNFATX 433
+A EG YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK GDRG L R+SGN+
Sbjct: 76 VATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVII 135
Query: 434 IGHNPDAKRTRVKLPSGAKKVLPSSTEAWSVLLLEVDVIDQXYFETWKGISPVQRQTLLL 613
+GH+ D +TRVKLPSGAKKV+PSS ++ ID+ + + + +
Sbjct: 136 VGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCW 195
Query: 614 GICTWVLP*NPVAHPHGGG 670
V NPV HPHGGG
Sbjct: 196 PRTRGVAM-NPVDHPHGGG 213
Score = 112 bits (270), Expect = 4e-26
Identities = 52/77 (67%), Positives = 65/77 (84%)
Frame = +3
Query: 27 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 206
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 207 VHFRDPYKFKTRKELFL 257
V FR+PY ++T E F+
Sbjct: 60 VAFRNPYHYRTDVETFV 76
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 140 bits (339), Expect = 2e-34
Identities = 71/139 (51%), Positives = 88/139 (63%)
Frame = +2
Query: 254 LAPEGYYTGQFVYCGKXATLEVGNVMPVGAMPEGTIVCNLEEKXGDRGRLARASGNFATX 433
+A EG YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK GDRG L R+SGN+
Sbjct: 76 VATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVII 135
Query: 434 IGHNPDAKRTRVKLPSGAKKVLPSSTEAWSVLLLEVDVIDQXYFETWKGISPVQRQTLLL 613
+GH+ D +TRVKLPSGAKKV+PSS ++ ID+ + + + +
Sbjct: 136 VGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCW 195
Query: 614 GICTWVLP*NPVAHPHGGG 670
V NPV HPHGGG
Sbjct: 196 PRTRGVAM-NPVDHPHGGG 213
Score = 112 bits (270), Expect = 4e-26
Identities = 52/77 (67%), Positives = 65/77 (84%)
Frame = +3
Query: 27 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 206
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 207 VHFRDPYKFKTRKELFL 257
V FR+PY ++T E F+
Sbjct: 60 VAFRNPYHYRTDVETFV 76
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 140 bits (339), Expect = 2e-34
Identities = 71/139 (51%), Positives = 88/139 (63%)
Frame = +2
Query: 254 LAPEGYYTGQFVYCGKXATLEVGNVMPVGAMPEGTIVCNLEEKXGDRGRLARASGNFATX 433
+A EG YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK GDRG L R+SGN+
Sbjct: 76 VATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVII 135
Query: 434 IGHNPDAKRTRVKLPSGAKKVLPSSTEAWSVLLLEVDVIDQXYFETWKGISPVQRQTLLL 613
+GH+ D +TRVKLPSGAKKV+PSS ++ ID+ + + + +
Sbjct: 136 VGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCW 195
Query: 614 GICTWVLP*NPVAHPHGGG 670
V NPV HPHGGG
Sbjct: 196 PRTRGVAM-NPVDHPHGGG 213
Score = 112 bits (270), Expect = 4e-26
Identities = 52/77 (67%), Positives = 65/77 (84%)
Frame = +3
Query: 27 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 206
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 207 VHFRDPYKFKTRKELFL 257
V FR+PY ++T E F+
Sbjct: 60 VAFRNPYHYRTDVETFV 76
>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
L2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 318
Score = 44.8 bits (101), Expect = 1e-05
Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 4/124 (3%)
Frame = +2
Query: 311 LEVGNVMPVGAMPEGTIVCNLEEKXGDRGRLARASGNFATXIGHNPDAKRTRVKLPSGA- 487
L+ GN P+ +P GT++ + + +L R++G+ A I D K V+L SG
Sbjct: 162 LKPGNCFPLRLIPIGTVIHAIGVNPNQKAKLCRSAGSSARIIAF--DGKYAIVRLQSGEE 219
Query: 488 KKVLPSSTEAWSV---LLLEVDVIDQXYFETWKGISPVQRQTLLLGICTWVLP*NPVAHP 658
+K+L +S V + + + + W GI P R T + NP HP
Sbjct: 220 RKILDTSFATIGVVSNIYWQHRQLGKAGRSRWLGIRPTVRGTAM----------NPCDHP 269
Query: 659 HGGG 670
HGGG
Sbjct: 270 HGGG 273
>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 197
Score = 27.9 bits (59), Expect = 1.4
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +3
Query: 144 YIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFLLPKATTQANL 287
Y+ + K ++P RGA HFR P + T+ +LP TT+ N+
Sbjct: 55 YLAYLRKACRYNPSRGA----FHFRAPSRIFTKAVRGMLPHKTTRGNI 98
>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 26.6 bits (56), Expect = 3.3
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = -3
Query: 352 LRHSSNRHHIXNFKSCXLSTINKLACVVAFGSKKSSFLVLN--LYGSRKCTTAKG 194
L SS HH+ +ST L + K+ F+VLN +Y S K + +G
Sbjct: 234 LNTSSESHHLLELLGLRISTFMSLGDIDKELISKTDFVVLNNAVYDSEKISFPEG 288
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 26.2 bits (55), Expect = 4.3
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 575 KGISPVQRQTLLLGICTWVLP 637
KG+S Q+ L+L CTW+ P
Sbjct: 902 KGLSGGQKVKLVLAACTWLRP 922
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 25.4 bits (53), Expect = 7.5
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 623 TWVLP*NPVAHPHGG 667
TWV P NP+ P+GG
Sbjct: 333 TWVDPRNPLVRPNGG 347
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 48 QRKGAGSVFVSHTKKRKGAPKLRSLD 125
+R+G+ +HTK+ K APK D
Sbjct: 167 KRRGSVGTTATHTKRSKNAPKTSPKD 192
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,738,617
Number of Sequences: 5004
Number of extensions: 53842
Number of successful extensions: 143
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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