Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0787
         (672 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0812 + 23383704-23384143,23384902-23385247                      130   1e-30
01_07_0112 - 41149461-41151674,41151688-41153265,41154344-411555...    29   3.4  
08_02_1264 + 25706009-25706148,25706613-25706716,25707108-257072...    28   7.8  

>12_02_0812 + 23383704-23384143,23384902-23385247
          Length = 261

 Score =  130 bits (313), Expect = 1e-30
 Identities = 65/154 (42%), Positives = 90/154 (58%)
 Frame = +2

Query: 209 TLPRSIQVQDKEGALLAPEGYYTGQFVYCGKXATLEVGNVMPVGAMPEGTIVCNLEEKXG 388
           T     + + ++   +A EG YTGQFVYCG+ ATL +GNV+P+ ++PEG +VCN+E   G
Sbjct: 62  TFRHPFRYKHQKELFVAAEGMYTGQFVYCGRRATLSIGNVLPIRSVPEGAVVCNVEHHVG 121

Query: 389 DRGRLARASGNFATXIGHNPDAKRTRVKLPSGAKKVLPSSTEAWSVLLLEVDVIDQXYFE 568
           DRG  ARASG++A  I HNPD   +R+KLPSGAKK++PSS  A    +      ++   +
Sbjct: 122 DRGVFARASGDYAIVISHNPDNGTSRIKLPSGAKKIVPSSCRAMIGQVAGGGRTEKPMLK 181

Query: 569 TWKGISPVQRQTLLLGICTWVLP*NPVAHPHGGG 670
                   + +         V   NPV HPHGGG
Sbjct: 182 AGNAYHKYRVKRNCWPKVRGVAM-NPVEHPHGGG 214



 Score =  122 bits (294), Expect = 3e-28
 Identities = 56/77 (72%), Positives = 65/77 (84%)
 Frame = +3

Query: 27  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 206
           MGRVIRAQRKGAGSVF SHT  RKG  + RSLD+ ER+GY+KGVV DIIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAK 60

Query: 207 VHFRDPYKFKTRKELFL 257
           V FR P+++K +KELF+
Sbjct: 61  VTFRHPFRYKHQKELFV 77



 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 16/24 (66%), Positives = 18/24 (75%)
 Frame = +3

Query: 558 PILKPGRAYHQYNVKRYCWAYVRG 629
           P+LK G AYH+Y VKR CW  VRG
Sbjct: 178 PMLKAGNAYHKYRVKRNCWPKVRG 201


>01_07_0112 -
           41149461-41151674,41151688-41153265,41154344-41155507,
           41155807-41156293,41156603-41156759,41157303-41157378
          Length = 1891

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -2

Query: 443 CVQSQWRSFQRHVPDDLYHXFSLQDCTQWY 354
           C    W++   H+P  L H  +  +C  WY
Sbjct: 73  CSCGLWKATTHHLPSALCHGLNYVNCAMWY 102


>08_02_1264 +
           25706009-25706148,25706613-25706716,25707108-25707284,
           25707775-25709708,25709781-25709867,25710058-25710091,
           25710293-25710381,25710522-25710674
          Length = 905

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 19/76 (25%), Positives = 32/76 (42%)
 Frame = +2

Query: 368 NLEEKXGDRGRLARASGNFATXIGHNPDAKRTRVKLPSGAKKVLPSSTEAWSVLLLEVDV 547
           N+E+  G+     +      +    N +  R  VKL SG KKV+ S       +L  + V
Sbjct: 727 NMEKSSGETSADKQDGDTSCSPSDGNSNNSRGSVKLASGDKKVMGSLKNLGQNMLENIQV 786

Query: 548 IDQXYFETWKGISPVQ 595
           I+  + +      PV+
Sbjct: 787 IESAFQQDRGQPGPVE 802


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,197,398
Number of Sequences: 37544
Number of extensions: 399643
Number of successful extensions: 963
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)