Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0787
         (672 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)             147   6e-36
SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)       138   5e-33
SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)    38   0.006
SB_2130| Best HMM Match : fn2 (HMM E-Value=2.7e-15)                    33   0.21 

>SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score =  147 bits (357), Expect = 6e-36
 Identities = 73/139 (52%), Positives = 91/139 (65%)
 Frame = +2

Query: 254 LAPEGYYTGQFVYCGKXATLEVGNVMPVGAMPEGTIVCNLEEKXGDRGRLARASGNFATX 433
           +A EG YTGQF+YCGK A L++GN +PVG MPEGTI+ ++EEK GDRGRLAR SGN+AT 
Sbjct: 77  VATEGMYTGQFIYCGKKAALQIGNCLPVGIMPEGTIISSVEEKTGDRGRLARTSGNYATV 136

Query: 434 IGHNPDAKRTRVKLPSGAKKVLPSSTEAWSVLLLEVDVIDQXYFETWKGISPVQRQTLLL 613
           I HN + KRTRVKLPSG KKV+PSS  A   ++     ID+   +  +     + +    
Sbjct: 137 ISHNVEKKRTRVKLPSGIKKVIPSSNRALVGIVAGGGRIDKPMLKAGRAYHKYKAKRNCW 196

Query: 614 GICTWVLP*NPVAHPHGGG 670
                V   NPV HPHGGG
Sbjct: 197 PRVRGVAM-NPVEHPHGGG 214



 Score =  137 bits (331), Expect = 9e-33
 Identities = 63/77 (81%), Positives = 68/77 (88%)
 Frame = +3

Query: 27  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 206
           MGRVIR QRKGAGS+F SHTK RKGA  LR  DYAERHGYIKGVVK+IIHDPGRGAPLAV
Sbjct: 1   MGRVIRGQRKGAGSIFTSHTKHRKGAANLRVHDYAERHGYIKGVVKEIIHDPGRGAPLAV 60

Query: 207 VHFRDPYKFKTRKELFL 257
           V FRDPY++K RKELF+
Sbjct: 61  VVFRDPYRYKLRKELFV 77


>SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)
          Length = 123

 Score =  138 bits (333), Expect = 5e-33
 Identities = 61/88 (69%), Positives = 72/88 (81%)
 Frame = +2

Query: 254 LAPEGYYTGQFVYCGKXATLEVGNVMPVGAMPEGTIVCNLEEKXGDRGRLARASGNFATX 433
           +A EG YTGQF+YCGK A L++GN +PVG MPEGTI+ ++EEK GDRGRLAR SGN+AT 
Sbjct: 35  VATEGMYTGQFIYCGKKAALQIGNCLPVGIMPEGTIISSVEEKTGDRGRLARTSGNYATV 94

Query: 434 IGHNPDAKRTRVKLPSGAKKVLPSSTEA 517
           I HN + KRTRVKLPSG KKV+PSS  A
Sbjct: 95  ISHNVEKKRTRVKLPSGIKKVIPSSNRA 122



 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 29/35 (82%), Positives = 33/35 (94%)
 Frame = +3

Query: 153 GVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFL 257
           GVVK+IIHDPGRGAPLAVV FRDPY++K RKELF+
Sbjct: 1   GVVKEIIHDPGRGAPLAVVVFRDPYRYKLRKELFV 35


>SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)
          Length = 222

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
 Frame = +2

Query: 236 DKEGALLAPEGYYTGQFVYCGKX-----ATLEVGNVMPVGAMPEGTIVCNLEEKXGDRGR 400
           ++E  ++AP+    G  +   +      A L+ G+  P+  +P GT+V N+E   G   +
Sbjct: 82  NQEKLVIAPDEIQVGDVMTASRGKPESLALLKPGDAYPLCFLPIGTVVHNIELYPGKGAQ 141

Query: 401 LARASGNFATXIGHNPDAKRTRVKLPSGAKKVLPS 505
           LARA+G  A  I    +     V+LPS  +K + S
Sbjct: 142 LARAAGTSAQLIRKTNET--AVVRLPSKVEKEVSS 174


>SB_2130| Best HMM Match : fn2 (HMM E-Value=2.7e-15)
          Length = 430

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 20/59 (33%), Positives = 26/59 (44%)
 Frame = +2

Query: 254 LAPEGYYTGQFVYCGKXATLEVGNVMPVGAMPEGTIVCNLEEKXGDRGRLARASGNFAT 430
           L P+GYY    V+  K    +     P G +  G +V    EK  + GR AR  GN  T
Sbjct: 17  LKPQGYYVYGKVFELKFLMPKATGTAPKGTLDNGDVVKEAFEKKTNMGRDARVHGNKRT 75


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,522,084
Number of Sequences: 59808
Number of extensions: 438550
Number of successful extensions: 1079
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)