Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0787
         (672 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF164152-1|AAD47076.1|  261|Anopheles gambiae ribosomal protein ...   159   6e-41
AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical prote...    25   2.9  
AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical prote...    25   2.9  
AJ439353-4|CAD27926.1|  338|Anopheles gambiae putative hox prote...    23   6.6  

>AF164152-1|AAD47076.1|  261|Anopheles gambiae ribosomal protein L8
           protein.
          Length = 261

 Score =  159 bits (387), Expect = 6e-41
 Identities = 78/139 (56%), Positives = 95/139 (68%)
 Frame = +2

Query: 254 LAPEGYYTGQFVYCGKXATLEVGNVMPVGAMPEGTIVCNLEEKXGDRGRLARASGNFATX 433
           +A EG YTGQFVYCG+ A L++GNV+P+G MPEGTIVCNLEEK GDRG+LAR SGN+A+ 
Sbjct: 77  IAAEGMYTGQFVYCGRRAQLQIGNVIPIGLMPEGTIVCNLEEKTGDRGKLARTSGNYASV 136

Query: 434 IGHNPDAKRTRVKLPSGAKKVLPSSTEAWSVLLLEVDVIDQXYFETWKGISPVQRQTLLL 613
           I HNPD KRTRVKLPSGAKKVLPS+  A   ++     ID+   +  +     + +    
Sbjct: 137 IAHNPDTKRTRVKLPSGAKKVLPSANRAMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCW 196

Query: 614 GICTWVLP*NPVAHPHGGG 670
                V   NPV HPHGGG
Sbjct: 197 PKVRGVAM-NPVEHPHGGG 214



 Score =  139 bits (336), Expect = 8e-35
 Identities = 63/77 (81%), Positives = 70/77 (90%)
 Frame = +3

Query: 27  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 206
           MGRVIRAQRKGAGSVF +HTKKRKG PKLR LDYAERHGY+KGVVK II DPGRGAPLAV
Sbjct: 1   MGRVIRAQRKGAGSVFRAHTKKRKGQPKLRHLDYAERHGYLKGVVKQIIQDPGRGAPLAV 60

Query: 207 VHFRDPYKFKTRKELFL 257
           V+FRDPY+F+  K+LF+
Sbjct: 61  VNFRDPYRFRLSKQLFI 77


>AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 135 RHGYIKGVVKDIIHDP 182
           R+  +K ++KDI+HDP
Sbjct: 737 RYTMLKDMIKDIMHDP 752


>AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 135 RHGYIKGVVKDIIHDP 182
           R+  +K ++KDI+HDP
Sbjct: 737 RYTMLKDMIKDIMHDP 752


>AJ439353-4|CAD27926.1|  338|Anopheles gambiae putative hox protein
           protein.
          Length = 338

 Score = 23.4 bits (48), Expect = 6.6
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 504 QAQRHGRYCCWR 539
           Q Q+HG++CC R
Sbjct: 280 QQQQHGQHCCCR 291


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 723,181
Number of Sequences: 2352
Number of extensions: 15238
Number of successful extensions: 25
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 67322955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)