Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0787
         (672 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81453-1|CAB03792.1|  260|Caenorhabditis elegans Hypothetical pr...   138   4e-33
AF045646-7|AAK29833.2|  321|Caenorhabditis elegans Hypothetical ...    34   0.080
Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical pr...    32   0.43 
AF043704-2|AAX88816.1|  407|Caenorhabditis elegans Prion-like-(q...    30   1.7  
Z81555-7|CAB04518.1|  561|Caenorhabditis elegans Hypothetical pr...    29   4.0  
Z81589-11|CAI58924.1|  330|Caenorhabditis elegans Hypothetical p...    28   5.3  
Z81555-8|CAB04512.2|  330|Caenorhabditis elegans Hypothetical pr...    28   5.3  
AF000261-1|AAB52922.1|  505|Caenorhabditis elegans Hypothetical ...    28   5.3  
Z99281-24|CAE18027.1|  155|Caenorhabditis elegans Hypothetical p...    28   6.9  
U70849-1|AAF99923.1|  381|Caenorhabditis elegans Hypothetical pr...    28   6.9  
U39742-6|AAK39195.2| 1059|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>Z81453-1|CAB03792.1|  260|Caenorhabditis elegans Hypothetical
           protein B0250.1 protein.
          Length = 260

 Score =  138 bits (333), Expect = 4e-33
 Identities = 65/140 (46%), Positives = 90/140 (64%)
 Frame = +2

Query: 251 LLAPEGYYTGQFVYCGKXATLEVGNVMPVGAMPEGTIVCNLEEKXGDRGRLARASGNFAT 430
           ++A EG +TGQF++CG  A +++GN++PVG +PEGT +CN+E K GDRG +ARASGN+AT
Sbjct: 76  VVAAEGMHTGQFIHCGAKAQIQIGNIVPVGTLPEGTTICNVENKSGDRGVIARASGNYAT 135

Query: 431 XIGHNPDAKRTRVKLPSGAKKVLPSSTEAWSVLLLEVDVIDQXYFETWKGISPVQRQTLL 610
            I HNPD K+TR++LPSGAKKV+ S   A   L+      D+   +  +     + +   
Sbjct: 136 VIAHNPDTKKTRIRLPSGAKKVVQSVNRAMIGLVAGGGRTDKPLLKAGRSYHKYKAKRNS 195

Query: 611 LGICTWVLP*NPVAHPHGGG 670
                 V   NPV HPHGGG
Sbjct: 196 WPRVRGVAM-NPVEHPHGGG 214



 Score =  128 bits (310), Expect = 3e-30
 Identities = 58/73 (79%), Positives = 63/73 (86%)
 Frame = +3

Query: 27  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 206
           MGR IR QRKGAG +F SH K RKGA KLR LDYAERHGYIKG+VKDIIHDPGRGAPLA+
Sbjct: 1   MGRRIRIQRKGAGGIFKSHNKHRKGASKLRPLDYAERHGYIKGLVKDIIHDPGRGAPLAI 60

Query: 207 VHFRDPYKFKTRK 245
           + FRDPYK+KT K
Sbjct: 61  IAFRDPYKYKTVK 73


>AF045646-7|AAK29833.2|  321|Caenorhabditis elegans Hypothetical
           protein F56B3.8 protein.
          Length = 321

 Score = 34.3 bits (75), Expect = 0.080
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +2

Query: 320 GNVMPVGAMPEGTIVCNLEE-KXGDRGRLARASGNFATXIGHNPDAKRTRVKLP 478
           GN  P+G++  GT++ ++E     D     +A+G  AT + H  D   T VKLP
Sbjct: 160 GNAYPIGSLAAGTVINSIERYPTMDSETFVKAAGTSATIVRHQGDF--TVVKLP 211


>Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical
           protein T24B8.1 protein.
          Length = 134

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 16/35 (45%), Positives = 23/35 (65%)
 Frame = +2

Query: 434 IGHNPDAKRTRVKLPSGAKKVLPSSTEAWSVLLLE 538
           IGH  D +RTR  LP+G KKVL  + +   +LL++
Sbjct: 57  IGHGSD-RRTRFVLPNGYKKVLVQNVKDLDMLLMQ 90


>AF043704-2|AAX88816.1|  407|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 72
           protein.
          Length = 407

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 578 PSRFQNRXGQ*RPPPATIPTMPLCLXAEPSWLQTVAL 468
           P+    R G  RPP  T+P+  L L  EP+  +T+ +
Sbjct: 231 PAFASRRHGHRRPPTTTVPSTTLELITEPTSTETIPI 267


>Z81555-7|CAB04518.1|  561|Caenorhabditis elegans Hypothetical
           protein F58E10.3a protein.
          Length = 561

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 27  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAER 137
           +GR  R+ +KG    F +HT   K    L+ LD A++
Sbjct: 464 IGRTGRSDKKGTAYTFFTHTNASKAKDLLKVLDEAKQ 500


>Z81589-11|CAI58924.1|  330|Caenorhabditis elegans Hypothetical
           protein F58E10.6 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 138 HGYIKGVVKDIIHDPGRGAPLAVVHFR 218
           HG +  +V  I+H P R + LA +HF+
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311


>Z81555-8|CAB04512.2|  330|Caenorhabditis elegans Hypothetical
           protein F58E10.6 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 138 HGYIKGVVKDIIHDPGRGAPLAVVHFR 218
           HG +  +V  I+H P R + LA +HF+
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311


>AF000261-1|AAB52922.1|  505|Caenorhabditis elegans Hypothetical
           protein F19B10.11 protein.
          Length = 505

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 20/86 (23%), Positives = 35/86 (40%)
 Frame = +2

Query: 344 MPEGTIVCNLEEKXGDRGRLARASGNFATXIGHNPDAKRTRVKLPSGAKKVLPSSTEAWS 523
           +P     C + E+  DR ++    G   T    NP   R   K+P   + V+ S T    
Sbjct: 390 VPSFEEACEIYERWEDRDKVIE--GVDLTTFLFNPQGSR---KMPQKVRNVVGSFTVFQD 444

Query: 524 VLLLEVDVIDQXYFETWKGISPVQRQ 601
               E  +  +     W+G++P ++Q
Sbjct: 445 FFTRETGITGRAVNGYWRGLAPDEKQ 470


>Z99281-24|CAE18027.1|  155|Caenorhabditis elegans Hypothetical
           protein Y57G11C.44 protein.
          Length = 155

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +3

Query: 75  VSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPL 200
           +S  ++RK +     LD+++  G  K ++KDI +D  +  P+
Sbjct: 1   MSEVRQRKSSIIDSDLDFSDSDGEFKEIIKDIENDQWKDKPV 42


>U70849-1|AAF99923.1|  381|Caenorhabditis elegans Hypothetical
           protein F29B9.8 protein.
          Length = 381

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 301 LSTINKLACVVAFGSKKSSFLVLNLYGSRKCTTAKGAP 188
           +S+I   AC+V+FG     F  L L+  RK    K +P
Sbjct: 245 ISSIRLTACIVSFGIVTQMFASLFLFCRRKDEVTKTSP 282


>U39742-6|AAK39195.2| 1059|Caenorhabditis elegans Hypothetical
           protein C25F6.3 protein.
          Length = 1059

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -2

Query: 629 PTYICPAVTFDVVLVICPSRFQNRXGQ*RPPPATIPTMPLCLXA-EPSW 486
           P +  P    D+ + +C  +F+N  G    PP T  + P+C  A E  W
Sbjct: 536 PQFFTPIDEVDISVDMCGVKFENPFGLASAPPTT--SGPMCRRAFEQGW 582


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,495,030
Number of Sequences: 27780
Number of extensions: 322458
Number of successful extensions: 817
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)