Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0787
         (672 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) riboso...   135   3e-32
At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A)             130   8e-31
At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) riboso...   125   2e-29
At2g44065.2 68415.m05480 ribosomal protein L2 family protein sim...    49   3e-06
At2g44065.1 68415.m05479 ribosomal protein L2 family protein sim...    49   3e-06
At5g46180.1 68418.m05680 ornithine aminotransferase, putative / ...    29   2.8  
At5g42400.1 68418.m05162 SET domain-containing protein (TXR7) co...    28   4.9  
At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1, plast...    27   8.6  

>At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) ribosomal
           protein L8, cytosolic - Arabidopsis thaliana, PIR:T04582
          Length = 260

 Score =  135 bits (326), Expect = 3e-32
 Identities = 64/139 (46%), Positives = 89/139 (64%)
 Frame = +2

Query: 254 LAPEGYYTGQFVYCGKXATLEVGNVMPVGAMPEGTIVCNLEEKXGDRGRLARASGNFATX 433
           +A EG YTGQ++YCGK A L VGNV+P+G++PEG ++CN+E   GDRG LARASG++A  
Sbjct: 78  VAAEGMYTGQYLYCGKKANLMVGNVLPLGSIPEGAVICNVELHVGDRGALARASGDYAIV 137

Query: 434 IGHNPDAKRTRVKLPSGAKKVLPSSTEAWSVLLLEVDVIDQXYFETWKGISPVQRQTLLL 613
           I HNP++  TRVKLPSG+KK+LPS+  A    +      ++ + +        + +    
Sbjct: 138 IAHNPESNTTRVKLPSGSKKILPSACRAMIGQVAGGGRTEKPFLKAGNAYHKYKAKRNCW 197

Query: 614 GICTWVLP*NPVAHPHGGG 670
            +   V   NPV HPHGGG
Sbjct: 198 PVVRGVAM-NPVEHPHGGG 215



 Score =  115 bits (277), Expect = 3e-26
 Identities = 55/78 (70%), Positives = 64/78 (82%), Gaps = 1/78 (1%)
 Frame = +3

Query: 27  MGRVIRAQRKGA-GSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLA 203
           MGRVIRAQRKGA GSVF SHT  RKG  K RSLDY ER+GY+KG+V +IIHDPGRGAPLA
Sbjct: 1   MGRVIRAQRKGAAGSVFKSHTHHRKGPAKFRSLDYGERNGYLKGLVTEIIHDPGRGAPLA 60

Query: 204 VVHFRDPYKFKTRKELFL 257
            V FR P+++  +KELF+
Sbjct: 61  RVAFRHPFRYMKQKELFV 78


>At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A) 
          Length = 258

 Score =  130 bits (314), Expect = 8e-31
 Identities = 68/158 (43%), Positives = 95/158 (60%), Gaps = 4/158 (2%)
 Frame = +2

Query: 209 TLPRSIQVQDKEGALLAPEGYYTGQFVYCGKXATLEVGNVMPVGAMPEGTIVCNLEEKXG 388
           T     + + ++   +A EG YTGQF+YCGK ATL VGNV+P+ ++PEG +VCN+E   G
Sbjct: 62  TFRHPFRFKKQKELFVAAEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVVCNVEHHVG 121

Query: 389 DRGRLARASGNFATXIGHNPDAKRTRVKLPSGAKKVLPSSTEAWSVLLLEVDVIDQXYFE 568
           DRG LARASG++A  I HNPD+  TR+KLPSG+KK++PS   A    +      ++   +
Sbjct: 122 DRGVLARASGDYAIVIAHNPDSDTTRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPMLK 181

Query: 569 TWKGISP--VQRQT--LLLGICTWVLP*NPVAHPHGGG 670
                    V+R +   + G+       NPV HPHGGG
Sbjct: 182 AGNAYHKYRVKRNSWPKVRGVAM-----NPVEHPHGGG 214



 Score =  123 bits (296), Expect = 1e-28
 Identities = 57/77 (74%), Positives = 65/77 (84%)
 Frame = +3

Query: 27  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 206
           MGRVIRAQRKGAGSVF SHT  RKG  K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60

Query: 207 VHFRDPYKFKTRKELFL 257
           V FR P++FK +KELF+
Sbjct: 61  VTFRHPFRFKKQKELFV 77



 Score = 37.5 bits (83), Expect = 0.008
 Identities = 15/24 (62%), Positives = 17/24 (70%)
 Frame = +3

Query: 558 PILKPGRAYHQYNVKRYCWAYVRG 629
           P+LK G AYH+Y VKR  W  VRG
Sbjct: 178 PMLKAGNAYHKYRVKRNSWPKVRG 201


>At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) ribosomal
           protein L8, cytosolic, tomato, PIR1:R5TOL8
          Length = 258

 Score =  125 bits (302), Expect = 2e-29
 Identities = 62/139 (44%), Positives = 84/139 (60%)
 Frame = +2

Query: 254 LAPEGYYTGQFVYCGKXATLEVGNVMPVGAMPEGTIVCNLEEKXGDRGRLARASGNFATX 433
           +A EG YTGQF+YCGK ATL VGNV+P+ ++PEG ++CN+E   GDRG  ARASG++A  
Sbjct: 77  VAAEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIV 136

Query: 434 IGHNPDAKRTRVKLPSGAKKVLPSSTEAWSVLLLEVDVIDQXYFETWKGISPVQRQTLLL 613
           I HNPD   +R+KLPSG+KK++PS   A    +      ++   +        + +    
Sbjct: 137 IAHNPDNDTSRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCW 196

Query: 614 GICTWVLP*NPVAHPHGGG 670
                V   NPV HPHGGG
Sbjct: 197 PKVRGVAM-NPVEHPHGGG 214



 Score =  123 bits (296), Expect = 1e-28
 Identities = 57/77 (74%), Positives = 65/77 (84%)
 Frame = +3

Query: 27  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 206
           MGRVIRAQRKGAGSVF SHT  RKG  K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60

Query: 207 VHFRDPYKFKTRKELFL 257
           V FR P++FK +KELF+
Sbjct: 61  VAFRHPFRFKKQKELFV 77



 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 16/24 (66%), Positives = 18/24 (75%)
 Frame = +3

Query: 558 PILKPGRAYHQYNVKRYCWAYVRG 629
           P+LK G AYH+Y VKR CW  VRG
Sbjct: 178 PMLKAGNAYHKYRVKRNCWPKVRG 201


>At2g44065.2 68415.m05480 ribosomal protein L2 family protein
           similar to ribosomal protein L2 [Gossypium arboreum]
           GI:17644114; contains Pfam profile  PF03947: Ribosomal
           Proteins L2, C-terminal domain
          Length = 214

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 36/122 (29%), Positives = 54/122 (44%), Gaps = 4/122 (3%)
 Frame = +2

Query: 317 VGNVMPVGAMPEGTIVCNLEEKXGDRGRLARASGNFATXIGHNPDAKRTRVKLPSGAKKV 496
           +G+ MP+G M  GTI+ N+E   G   ++ RA+G  A  +   P   +  +KLPSG  K 
Sbjct: 59  IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117

Query: 497 LPSSTEAWSVLLLEVDVIDQXYFET----WKGISPVQRQTLLLGICTWVLP*NPVAHPHG 664
           + +   A    +       +  ++     W GI P  R   +          NP  HPHG
Sbjct: 118 INAKCRATIGTVSNPSHGTKKLYKAGQSRWLGIRPKVRGVAM----------NPCDHPHG 167

Query: 665 GG 670
           GG
Sbjct: 168 GG 169


>At2g44065.1 68415.m05479 ribosomal protein L2 family protein
           similar to ribosomal protein L2 [Gossypium arboreum]
           GI:17644114; contains Pfam profile  PF03947: Ribosomal
           Proteins L2, C-terminal domain
          Length = 214

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 36/122 (29%), Positives = 54/122 (44%), Gaps = 4/122 (3%)
 Frame = +2

Query: 317 VGNVMPVGAMPEGTIVCNLEEKXGDRGRLARASGNFATXIGHNPDAKRTRVKLPSGAKKV 496
           +G+ MP+G M  GTI+ N+E   G   ++ RA+G  A  +   P   +  +KLPSG  K 
Sbjct: 59  IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117

Query: 497 LPSSTEAWSVLLLEVDVIDQXYFET----WKGISPVQRQTLLLGICTWVLP*NPVAHPHG 664
           + +   A    +       +  ++     W GI P  R   +          NP  HPHG
Sbjct: 118 INAKCRATIGTVSNPSHGTKKLYKAGQSRWLGIRPKVRGVAM----------NPCDHPHG 167

Query: 665 GG 670
           GG
Sbjct: 168 GG 169


>At5g46180.1 68418.m05680 ornithine aminotransferase, putative /
           ornithine--oxo-acid aminotransferase, putative similar
           to SP|Q92413 Ornithine aminotransferase (EC 2.6.1.13)
           (Ornithine--oxo-acid aminotransferase) [Aspergillus
           nidulans] {Emericella nidulans}; contains Pfam profile
           PF00202: aminotransferase, class III
          Length = 475

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = +2

Query: 230 VQDKEGALLAPEGYYTGQFVYCGKXATLEVGNVMPVGAMPEG-TIVCNLEEKXGDRGRLA 406
           +Q + G ++ P+GY       C K   L + + +  G    G  + C+ EE   D   L 
Sbjct: 234 IQGEAGVIIPPDGYLKAVRELCTKYNVLMIADEVQSGLARSGKMLACDWEEIRPDMVILG 293

Query: 407 RASG 418
           +A G
Sbjct: 294 KALG 297


>At5g42400.1 68418.m05162 SET domain-containing protein (TXR7)
            contains Pfam profile PF00856: SET domain
          Length = 1423

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +3

Query: 87   KKRKGAPKL-RSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFL-L 260
            K +KG  KL R      +H   +  +KD+  D GR  P+A+          ++K+LFL +
Sbjct: 1122 KLQKGPNKLIRRRKPLAKHTTERSPIKDLSVDDGRPKPIALKPLEKLSSKPSKKKLFLSI 1181

Query: 261  PKA 269
            PK+
Sbjct: 1182 PKS 1184


>At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1,
           plastidic / lipoamide dehydrogenase 1 (PTLPD1) identical
           to plastidic lipoamide dehydrogenase from Arabidopsis
           thaliana [gi:7159282]
          Length = 570

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -3

Query: 427 GEVSRGTCQTTSITXFLFKIAHNGTLRHSSNRHHIXNF 314
           G+V  GTC           +A +G +R   N HH+ +F
Sbjct: 117 GDVVGGTCVNRGCVPSKALLAVSGRMRELQNEHHMKSF 154


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,808,668
Number of Sequences: 28952
Number of extensions: 299890
Number of successful extensions: 747
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)