Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0786
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    31   0.21 
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    28   1.1  
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po...    27   1.9  
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    26   5.9  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    25   7.8  

>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +1

Query: 385 ERSSGNHNHYINLKFLILYVDQL*R-NLIVIFLLYLYKYVPYSLEYSSLCIDNFSNREN 558
           E+S G  +   +L+ L+ Y++Q  R N +     +  + V Y+LEYSS  +D F+   +
Sbjct: 561 EKSRGLSSTVWSLQLLLCYLEQCLRLNTLHEDTTFPMRVVNYALEYSSKALDKFAENSH 619


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
 Frame = -2

Query: 541  NYLYKATNIPNY-----KVHIYINITKK*QLNFFTVDRHTKLETLNLYNDYD 401
            +YLYK +NIP+      K+   +  +KK  L +F + RH K+  L    D D
Sbjct: 1584 SYLYKVSNIPSLLESAAKLSTTLEDSKKSLLKYFELQRH-KISRLYFLGDDD 1634


>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 427

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -1

Query: 656 RKFTALYMLMYICVWFIYLFTVDKMSCQNVQTSFSRLLK 540
           RK +  Y ++ I + FIYL    K SC  V  + S L+K
Sbjct: 54  RKSSIRYTILQIGITFIYLQNNGKSSCIPVNINVSPLVK 92


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -1

Query: 665 FWPRKFTALYMLMYICVWFIYLFT-VDKMSCQNVQTSFSRLLKLSI 531
           +WP K T + +++++  W I L +  D  +      S  +  +LS+
Sbjct: 83  WWPCKTTVVCLILFLLFWIIVLISCADSKALPKNADSILKAYRLSV 128


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/30 (33%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -3

Query: 585 NVMSKCSDIIF-TITEIIYTKRRIFQTIRY 499
           N    C + +F +  +I Y+K R++QT+R+
Sbjct: 46  NSFFDCEEELFLSANKIFYSKLRVYQTVRH 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,884,131
Number of Sequences: 5004
Number of extensions: 61892
Number of successful extensions: 134
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)