Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0786
         (695 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032637-19|CAD54170.3|  140|Caenorhabditis elegans Hypothetical...    31   0.79 
AF125956-5|AAD14722.2|  353|Caenorhabditis elegans Serpentine re...    31   0.79 
U56963-7|AAQ01523.1|  526|Caenorhabditis elegans Amino acid tran...    30   1.8  
AL117201-2|CAI79268.1|  527|Caenorhabditis elegans Hypothetical ...    29   4.2  
AL117201-1|CAB55063.1|  541|Caenorhabditis elegans Hypothetical ...    29   4.2  
Z93381-5|CAB07608.2|  720|Caenorhabditis elegans Hypothetical pr...    28   7.3  

>AL032637-19|CAD54170.3|  140|Caenorhabditis elegans Hypothetical
           protein Y43F8C.18 protein.
          Length = 140

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +3

Query: 339 LCRVLLKC*FLAQYS*KVIGKS*SLYKFKVS---NFVCRSTVKKFNCYFFVIF 488
           LC+VL KC F   Y  + I KS  L +F+ S   N   +   ++F   FF IF
Sbjct: 43  LCKVLKKCTFPKPYQQENIAKSCELLEFQTSPLTNCYLKLKTQRFPVEFFKIF 95


>AF125956-5|AAD14722.2|  353|Caenorhabditis elegans Serpentine
           receptor, class h protein80 protein.
          Length = 353

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 15/50 (30%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
 Frame = -1

Query: 656 RKFTALYMLMYICVWFIYLFTVDKMSCQNVQTSFSRLL-KLSIQSDEYSK 510
           ++F  +Y  + I + FIY FT+ +   ++ +T +S++L K+   +D+Y K
Sbjct: 146 KRFKTVYYSIRIMLAFIYSFTIIEFVPEDQETLYSKVLEKVPCPADDYFK 195


>U56963-7|AAQ01523.1|  526|Caenorhabditis elegans Amino acid
           transporter protein 4 protein.
          Length = 526

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +3

Query: 150 ARKLFCMINTYRTKSCFTNKLISYTENVMFGNKFFERS*LIVFHYLN 290
           A  LF ++ T       TN LI+Y   VMFG + F  + L+   Y N
Sbjct: 349 AALLFQLVCTVVVTFIDTNSLINYVSFVMFGQRVFTMTALMWIRYRN 395


>AL117201-2|CAI79268.1|  527|Caenorhabditis elegans Hypothetical
           protein Y53H1C.1b protein.
          Length = 527

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +3

Query: 150 ARKLFCMINTYRTKSCFTNKLISYTENVMFGNKFFERS*LIVFHYLN 290
           A  LF +I T       T  LI+Y   VMFG + F  + L+   Y N
Sbjct: 352 AALLFQLICTIAVTFVDTESLITYVTFVMFGQRVFTMAALLWIRYRN 398


>AL117201-1|CAB55063.1|  541|Caenorhabditis elegans Hypothetical
           protein Y53H1C.1a protein.
          Length = 541

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +3

Query: 150 ARKLFCMINTYRTKSCFTNKLISYTENVMFGNKFFERS*LIVFHYLN 290
           A  LF +I T       T  LI+Y   VMFG + F  + L+   Y N
Sbjct: 352 AALLFQLICTIAVTFVDTESLITYVTFVMFGQRVFTMAALLWIRYRN 398


>Z93381-5|CAB07608.2|  720|Caenorhabditis elegans Hypothetical
           protein F28G4.5 protein.
          Length = 720

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -2

Query: 418 LYNDYDFPMTFQEY*AKN*HFNKTLHNKPTVHRIFHIITIY 296
           LYN YDFP  F     KN +F   +++KP +    + I I+
Sbjct: 467 LYNIYDFPADFFGN-GKNTYFYDMIYDKPWIRGTPYFIGIF 506


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,547,188
Number of Sequences: 27780
Number of extensions: 331946
Number of successful extensions: 726
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)