Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0785
(670 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 31 0.15
SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual 29 0.61
SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 27 1.8
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 26 4.3
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R... 26 4.3
SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces pomb... 26 5.6
SPAC1071.09c |||DNAJ domain protein, DNAJC9 family|Schizosacchar... 26 5.6
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 26 5.6
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 25 7.5
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 9.9
SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3 |Schi... 25 9.9
SPCC320.14 ||SPCC330.15c|threo-3-hydroxyaspartate ammonia-lyase ... 25 9.9
SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA methyltransfera... 25 9.9
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch... 25 9.9
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 31.1 bits (67), Expect = 0.15
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +3
Query: 57 HTSPYRTPLCPGLSPLSPARN*SHDGYPASP*RL*RNGTAPSLSDRTR*YSP 212
+TSP+ + + PG SP+ + S GY SP + ++PS S + YSP
Sbjct: 1539 YTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYM---PSSPSYSPTSPSYSP 1587
Score = 29.5 bits (63), Expect = 0.46
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +3
Query: 60 TSPYRTPLCPGLSPLSPARN*SHDGY-PASP*RL*RNGTAPSLSDRTR*YSP 212
TSP +P P SP SP+ + + Y P SP + T+PS S + YSP
Sbjct: 1609 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSP 1657
Score = 29.5 bits (63), Expect = 0.46
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +3
Query: 60 TSPYRTPLCPGLSPLSPARN*SHDGY-PASP*RL*RNGTAPSLSDRTR*YSP 212
TSP +P P SP SP+ + + Y P SP + T+PS S + YSP
Sbjct: 1637 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSP 1685
Score = 29.5 bits (63), Expect = 0.46
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +3
Query: 60 TSPYRTPLCPGLSPLSPARN*SHDGY-PASP*RL*RNGTAPSLSDRTR*YSP 212
TSP +P P SP SP+ + + Y P SP + T+PS S + YSP
Sbjct: 1665 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSP 1713
Score = 29.5 bits (63), Expect = 0.46
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +3
Query: 60 TSPYRTPLCPGLSPLSPARN*SHDGY-PASP*RL*RNGTAPSLSDRTR*YSP 212
TSP +P P SP SP+ + + Y P SP + T+PS S + YSP
Sbjct: 1693 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSP 1741
Score = 28.7 bits (61), Expect = 0.80
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +3
Query: 48 PHRHTSPYRTPLCPGLSPLSPARN*SHDGY-PASP*RL*RNGTAPSLSDRTR*YSP 212
P TSP P P SP SP+ + + Y P SP + T+PS S + YSP
Sbjct: 1563 PGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSATSPSYSP 1615
Score = 28.7 bits (61), Expect = 0.80
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +3
Query: 60 TSPYRTPLCPGLSPLSPARN*SHDGYPASP*RL*RNGTAPSLSDRTR*YSP 212
TSP +P P SP SP+ + + Y A+ + T+PS S + YSP
Sbjct: 1581 TSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSY--SPTSPSYSPTSPSYSP 1629
Score = 25.8 bits (54), Expect = 5.6
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +3
Query: 60 TSPYRTPLCPGLSPLSPARN*SHDGY-PASP 149
TSP +P P SP SP+ + + Y P SP
Sbjct: 1721 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1751
>SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 29.1 bits (62), Expect = 0.61
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +2
Query: 17 STYCPEYTTMATSPYIPL*DTALPRSF--TAVSSSELEPRRVSSFSL 151
ST CP +TT+ T+ P T P S + VSS+ ++ VSS S+
Sbjct: 54 STACPLFTTIYTNGITPGTTTIYPTSISTSGVSSNNIDETSVSSESI 100
>SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 624
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 357 FTGHGVSALKHGRNCLHLFDLSNGH 431
F+G G+ A+ HG L+ FD NG+
Sbjct: 100 FSGGGLRAMVHGGGVLNAFDSRNGN 124
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 26.2 bits (55), Expect = 4.3
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Frame = +3
Query: 366 HGVSAL---KHGRNCLHLFDLSNGHLFVTHVLHDD 461
HG L K G NCLHL + L V ++LH D
Sbjct: 90 HGADPLLKDKQGFNCLHLAVHAASPLLVVYLLHLD 124
>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
Res1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 637
Score = 26.2 bits (55), Expect = 4.3
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 22 VLSGIHDDGHIAIHPLIGHRFAQVFHRCLQLG 117
V +GI +DGH A+H ++ H LQ G
Sbjct: 229 VNAGIDEDGHTALHWAAAMGNLEMMHALLQAG 260
>SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 436
Score = 25.8 bits (54), Expect = 5.6
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = -2
Query: 123 SNSELETAVKDLGK---AVSYKGMYGDVAIVVYSGQYVEN 13
SN EL + +D+G A+ +K YGD I ++SG+ N
Sbjct: 313 SNKELISINQDIGTNPAALIWKKKYGDEYIELFSGRLSNN 352
>SPAC1071.09c |||DNAJ domain protein, DNAJC9
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 282
Score = 25.8 bits (54), Expect = 5.6
Identities = 18/58 (31%), Positives = 23/58 (39%)
Frame = -3
Query: 575 FAPGYVKRKHEVTPPDXRASHADERSAESGGPAYRRRRIIMQNMRDEEVAIAQVEEMQ 402
FAP KRK + A A+E S E G ++R DEE A + Q
Sbjct: 194 FAPNEKKRKRRAKAAEREAQEAEELSMELGLDENLKKR-RKAGASDEEALSALIRSRQ 250
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 25.8 bits (54), Expect = 5.6
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Frame = +3
Query: 393 RNCLHLFDLSNGHLFVTHVLHDD-------ATAAVSGSARFCGSLIGMRRTXIWRSHFML 551
+N +HL LS G VT+ + + AT +SG+ + S ++ +W+ ++
Sbjct: 120 KNQVHLLSLSKGSWEVTNTISCEKTPLLFCATVQISGNEIYIASASAFQQIYVWKFNYNN 179
Query: 552 P 554
P
Sbjct: 180 P 180
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 25.4 bits (53), Expect = 7.5
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -1
Query: 229 AERQRCGEYHRVRSERLGAVPFLQSRQGEAGYPSWL*FRAGDSGE 95
+E + E SER G FL+ + E P+ L F G+S E
Sbjct: 116 SEEESESEEESDESERSGPSSFLKKPEKEEAKPAGLKFLRGESSE 160
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -1
Query: 520 RRMPMRDPQNLADPLTAAVASSCRTCVTKRWPLL 419
R+ + D QN+ V S TC+ K+WP +
Sbjct: 1841 RQKTLLDSQNILQS-QLPVLESVITCINKKWPCI 1873
>SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 192
Score = 25.0 bits (52), Expect = 9.9
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Frame = -3
Query: 560 VKRKHEVTPPDXRASHADERSAESGGPAYRRRRIIMQNMR-----DEEVAIAQVEEMQAV 396
+KR +V R + + + +++I QN+ + EV A+V+E Q V
Sbjct: 94 MKRVSQVHAKRERLFYKKRLAGKRAQELQEAQKLIAQNVPQFTEPEGEVETAEVQEPQIV 153
Query: 395 SAVLKCRYTMTGEAFDPVEVDMGRSEENN 309
S YTM E +PV++ + + N
Sbjct: 154 SDE---EYTMEEEVAEPVKIPVLAKKRKN 179
>SPCC320.14 ||SPCC330.15c|threo-3-hydroxyaspartate ammonia-lyase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 323
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 201 IVFDPKGWALFRSFKAVKEKLDTRR 127
IV +P G F + +A+KEKL +R
Sbjct: 278 IVVEPTGCLSFAAARAMKEKLKNKR 302
>SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 548
Score = 25.0 bits (52), Expect = 9.9
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = -2
Query: 225 NASGVVNIIVFDPKGWALFRSFKAVKEKLDTRRG-SNSELETAVKDLGKAVSYKGMYGDV 49
+A + + + RS + KE + +R +N LE AVK + K V+Y + D+
Sbjct: 118 SADNIAGFTILEALSATGLRSIRYAKELPNVKRILANDLLENAVKTIEKNVNYNNV-SDI 176
Query: 48 AI 43
I
Sbjct: 177 VI 178
>SPBC9B6.11c |||CCR4/nocturin family
endoribonuclease|Schizosaccharomyces pombe|chr
2|||Manual
Length = 502
Score = 25.0 bits (52), Expect = 9.9
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -1
Query: 211 GEYHRVRSERLGAVPFLQSRQGEAGYPSWL*FRAGDSGERP 89
G Y R+R GA+ + + +PSW F AGD P
Sbjct: 267 GSYERLRQ---GAILVKEVNKMAQSHPSWPVFIAGDFNTEP 304
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,903,232
Number of Sequences: 5004
Number of extensions: 61525
Number of successful extensions: 207
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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