Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0785
(670 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 31 0.83
10_08_0789 + 20569738-20570207,20573425-20573464,20573484-205735... 30 1.9
10_05_0086 + 9025410-9025730,9025974-9026008,9026194-9026279,902... 29 2.5
01_06_0723 + 31501900-31502808,31502846-31503295 29 3.3
07_03_0061 + 12972944-12973054,12974509-12974536,12974701-129748... 29 4.4
04_04_0248 - 23891684-23892064 29 4.4
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 28 5.9
01_04_0122 - 16329370-16329478,16329636-16329639,16329872-163299... 28 5.9
10_03_0047 - 7358656-7359113,7359216-7359948 28 7.7
08_02_0650 - 19708479-19710507,19711033-19711889 28 7.7
05_01_0383 + 2990812-2990855,2991364-2991463,2991554-2991622,299... 28 7.7
03_05_0954 - 29113938-29114024,29114277-29114444,29115156-291152... 28 7.7
01_05_0342 - 21147940-21148213,21149626-21149697,21150273-211503... 28 7.7
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 31.1 bits (67), Expect = 0.83
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +3
Query: 60 TSPYRTPLCPGLSPLSPARN*SHDGY-PASP*RL*RNGTAPSLSDRTR*YSP 212
TSP +P P SP SPA + + Y P SP + T+PS S + YSP
Sbjct: 1644 TSPVYSPTSPAYSPTSPAYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSP 1692
Score = 31.1 bits (67), Expect = 0.83
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +3
Query: 48 PHRHTSPYRTPLCPGLSPLSPARN*SHDGY-PASP*RL*RNGTAPSLSDRTR*YSP 212
P+ TSP +P P SP SP+ + Y P SP G +P S + YSP
Sbjct: 1768 PYSQTSPNYSPTSPTYSPTSPSYSQPSPSYSPTSPYTT-SGGPSPDYSPTSPNYSP 1822
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +3
Query: 60 TSPYRTPLCPGLSPLSPARN*SHDGY-PASP*RL*RNGTAPSLSDRTR*YSP 212
TSP +P P SP SPA + + GY P SP + T+P+ S + Y+P
Sbjct: 1700 TSPSYSPTSPSYSPTSPAYSPTSPGYSPTSP---SYSPTSPNYSPTSPSYNP 1748
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +3
Query: 60 TSPYRTPLCPGLSPLSPARN*SHDGYPASP*RL*RNGTAPSLSDRTR*YSP 212
TSP +P P +P S + SH P+SP + T+P+ S + YSP
Sbjct: 1735 TSPNYSPTSPSYNPSSAKYSPSHAYSPSSPRLSPYSQTSPNYSPTSPTYSP 1785
Score = 29.5 bits (63), Expect = 2.5
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +3
Query: 60 TSPYRTPLCPGLSPLSPARN*SHDGY-PASP*RL*RNGTAPSLSDRTR*YSP 212
TSP +P P SP SP+ + + Y P SP + T+PS S + YSP
Sbjct: 1595 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSP 1643
Score = 29.5 bits (63), Expect = 2.5
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +3
Query: 60 TSPYRTPLCPGLSPLSPARN*SHDGY-PASP*RL*RNGTAPSLSDRTR*YSP 212
TSP +P P SP SPA + + Y P SP + T+PS S + YSP
Sbjct: 1637 TSPSYSPTSPVYSPTSPAYSPTSPAYSPTSP---SYSPTSPSYSPTSPSYSP 1685
Score = 29.5 bits (63), Expect = 2.5
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +3
Query: 60 TSPYRTPLCPGLSPLSPARN*SHDGY-PASP*RL*RNGTAPSLSDRTR*YSP 212
TSP +P P SP SP+ + + Y P SP + T+PS S + YSP
Sbjct: 1672 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTSPAYSP 1720
Score = 27.9 bits (59), Expect = 7.7
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +3
Query: 60 TSPYRTPLCPGLSPLSPARN*SHDGY-PASP*RL*RNGTAPSLSDRTR*YSP 212
TSP +P P SP SP+ Y P SP + T+PS S + YSP
Sbjct: 1567 TSPSYSPASPSYSPTSPSYTPGSPTYSPTSP---SYSPTSPSYSPTSPSYSP 1615
>10_08_0789 + 20569738-20570207,20573425-20573464,20573484-20573536,
20573633-20574212,20574323-20575384,20575631-20575813,
20576112-20576199,20576285-20576532,20576712-20577053,
20579026-20579163,20579521-20579547
Length = 1076
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Frame = +1
Query: 94 FHRCLQLGIRA--TTGIQLLLDGFEG 165
FHRC +L +R+ TTG +L L GF G
Sbjct: 1038 FHRCPELHLRSGVTTGAELRLPGFHG 1063
>10_05_0086 +
9025410-9025730,9025974-9026008,9026194-9026279,
9026602-9026740,9028504-9028663
Length = 246
Score = 29.5 bits (63), Expect = 2.5
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = -3
Query: 350 DPVEVDMGRSEENNITQSGGTEWSKRDKSTYDRPTISKPTR--*TPAVW*ISSCSIRKAG 177
DPV + R + T GG E S R + P + P P+ W S+ S+ G
Sbjct: 24 DPVAAGVPRLTSHGSTGGGGEESSGRQATLQSSPPLPPPASSCALPSSWLSSTSSL--LG 81
Query: 176 RCSVP 162
RC +P
Sbjct: 82 RCRLP 86
>01_06_0723 + 31501900-31502808,31502846-31503295
Length = 452
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +3
Query: 561 ISRRKFTCGSPATEFGPIGTSLLTDSLAVAFT 656
+SRR + G+ E+ GTSL D+LA FT
Sbjct: 25 LSRRCRSSGADTAEYDANGTSLTDDALAATFT 56
>07_03_0061 +
12972944-12973054,12974509-12974536,12974701-12974870,
12975878-12976043,12976122-12976425,12977155-12977350,
12977464-12977622,12978311-12978371,12978904-12978967,
12979099-12979346,12980039-12980250,12980344-12980456,
12980547-12980623,12980710-12980873,12981493-12981564,
12981565-12981760,12981813-12981854,12982358-12982440,
12982534-12982671,12982942-12983124,12983216-12983263
Length = 944
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = -1
Query: 343 LRWI-WAAVRRITSRSPAARSGASVTSPRMTDRRYRSLRAERQRCGE 206
LRW +R +PA S A+ S + T +S R +RCGE
Sbjct: 51 LRWDDQEKIRNYVGSAPATASSAAAISDKCTIEVAKSARTSCRRCGE 97
>04_04_0248 - 23891684-23892064
Length = 126
Score = 28.7 bits (61), Expect = 4.4
Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Frame = -1
Query: 334 IWAAVRRITSRSPAARSGASVTSPRMTDRRYRSLRAERQR----CGEYHRVRSERLGAVP 167
IW AV PAA +GA + S R+RS A R R+R A+P
Sbjct: 15 IWPAVVAAARMRPAAATGARMQSVAAAATRFRSAAAAASRMRLAAAAATRMRPAAAAAMP 74
Query: 166 FLQS 155
L S
Sbjct: 75 LLPS 78
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +3
Query: 60 TSPYRTPLCPGLSPLSPARN*SHDGY-PASP*RL*RNGTAPSLSDRTR*YSP 212
TSP +P P SP SP+ + + Y P SP + T+P S + YSP
Sbjct: 1755 TSPSYSPTSPSYSPTSPSYSPTSSAYSPTSP---AYSPTSPGYSPTSPSYSP 1803
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +3
Query: 60 TSPYRTPLCPGLSPLSPARN*SHDGYPASP*RL*RNGTAPSLSDRTR*YSP 212
TSP +P P SP SP+ + + Y SP + T+P+ S + YSP
Sbjct: 1748 TSPSYSPTSPSYSPTSPSYSPTSPSY--SPTSSAYSPTSPAYSPTSPGYSP 1796
>01_04_0122 -
16329370-16329478,16329636-16329639,16329872-16329965,
16330409-16330478,16330815-16330960
Length = 140
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -1
Query: 517 RMPMRDPQNLADPLTAAVASSCRTCVTKRWPLLRSKRCRQFLPC 386
R P +D L +T A S+ + +T PL+ + CR+++ C
Sbjct: 9 RCPQQDRLRLLVSITEATDSAEKIYITLELPLIPTHACRRWIRC 52
>10_03_0047 - 7358656-7359113,7359216-7359948
Length = 396
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +1
Query: 118 IRATTGIQLLLDGFEGTEQ-RPAFRIEHDDIHHTAGVQRVGFDIVGRSYV 264
I TGI ++D Q R FR+ ++IH+ + F +VG ++V
Sbjct: 42 IPVQTGISWMMDTMANRSQCRAMFRLTAEEIHNLHDLLVTSFGLVGTAWV 91
>08_02_0650 - 19708479-19710507,19711033-19711889
Length = 961
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -2
Query: 171 FRSFKAVKEKLDTRRGSNSELETAVKDLGKAVSYKGMY 58
F S + V+ +D R S+ E+E A+ +VS +G Y
Sbjct: 907 FASLRHVRVFIDCRDASDCEMEAALAATANSVSLRGSY 944
>05_01_0383 +
2990812-2990855,2991364-2991463,2991554-2991622,
2991724-2991960,2992045-2992228,2992307-2992442,
2992529-2992691,2992958-2993108,2993154-2993278,
2993349-2993504,2993792-2993860,2993951-2994019,
2994127-2994264,2994626-2994773,2994856-2994866,
2995212-2995352,2995441-2995569,2995860-2995899,
2996020-2996348,2996902-2996919
Length = 818
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -1
Query: 157 SRQGEAGYPSWL*FRAGDSGERPGQ 83
S+Q EAG P +AGD+GE+P Q
Sbjct: 687 SKQTEAGNPERNFTKAGDTGEKPTQ 711
>03_05_0954 -
29113938-29114024,29114277-29114444,29115156-29115212,
29115314-29115369,29115463-29115572,29116142-29116310,
29116418-29116742,29117378-29117442,29117541-29117712,
29118191-29118484
Length = 500
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = -2
Query: 177 ALFRSFKAVKEKLDTRRGSNSELETAVKDLGKAVSYKGMYGDVAIVVYSGQYVENGV 7
AL +A +L+ S + L A +DLG + D AIV Y ++V V
Sbjct: 4 ALVERLEAAVARLEAAVASGASLSAAPRDLGDGLDAAAAASDPAIVAYD-EFVAGAV 59
>01_05_0342 -
21147940-21148213,21149626-21149697,21150273-21150397,
21150625-21150684,21150824-21150902,21151041-21151126,
21151224-21151544
Length = 338
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/56 (26%), Positives = 22/56 (39%)
Frame = -3
Query: 422 AQVEEMQAVSAVLKCRYTMTGEAFDPVEVDMGRSEENNITQSGGTEWSKRDKSTYD 255
A + ++ S + R GEA + G EE + G EW D+ YD
Sbjct: 30 AHLRTLRLPSGLAVSRRAGFGEAARAAATERGAIEEEEEEEEGFPEWGNGDEDEYD 85
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,462,661
Number of Sequences: 37544
Number of extensions: 514404
Number of successful extensions: 1792
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1778
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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