Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0785
(670 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53865| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.069
SB_6115| Best HMM Match : efhand (HMM E-Value=0.22) 33 0.28
SB_36408| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_56561| Best HMM Match : Hom_end_hint (HMM E-Value=4.1) 30 1.5
SB_37253| Best HMM Match : Atrophin-1 (HMM E-Value=0.68) 29 2.6
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) 29 2.6
SB_38165| Best HMM Match : Drf_FH1 (HMM E-Value=1) 29 3.4
SB_36151| Best HMM Match : HEAT (HMM E-Value=4.5) 29 3.4
SB_20479| Best HMM Match : Collagen (HMM E-Value=1) 29 3.4
SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0) 29 4.5
SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_24072| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_59599| Best HMM Match : rve (HMM E-Value=1.69557e-43) 28 7.9
SB_57705| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_35254| Best HMM Match : Vicilin_N (HMM E-Value=0.066) 28 7.9
SB_17949| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.4) 28 7.9
SB_58282| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_27764| Best HMM Match : RVT_1 (HMM E-Value=3.99931e-42) 28 7.9
>SB_53865| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 919
Score = 34.7 bits (76), Expect = 0.069
Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -1
Query: 316 RITSRSPAARSGASVTSPRMTDRRYRSLRAERQRCGEYHR-VRSERLGAV 170
R TSRSP R SV+ P RR RS +RQR G+Y R + R G +
Sbjct: 511 RSTSRSPRRRHSPSVSPPYR--RRSRSRSPQRQRLGKYGRDITCTRYGTI 558
>SB_6115| Best HMM Match : efhand (HMM E-Value=0.22)
Length = 822
Score = 32.7 bits (71), Expect = 0.28
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = -3
Query: 557 KRKHEVTPPDXRASHADERSAESGG-PAYRRRRIIMQNMRDEEVAIAQVEEMQAVSAVLK 381
K + EVT P+ A+ DE ++ S P R ++ ++ EE + E VSA+L+
Sbjct: 194 KTEEEVTKPEEEANKPDEEASVSDEQPLTNEERKLLDSI-PEEFNSERSETETTVSAILR 252
Query: 380 CRYTMTGEAFD 348
+ G AFD
Sbjct: 253 PEKEVEGSAFD 263
>SB_36408| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 458
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +1
Query: 619 LRYLQIHWPSLLQRRPW 669
L + IHWPS+LQRR W
Sbjct: 277 LSRITIHWPSVLQRRDW 293
>SB_56561| Best HMM Match : Hom_end_hint (HMM E-Value=4.1)
Length = 390
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -3
Query: 554 RKHEVTPPDXRASHADERSAESGGPAYR-RRRIIMQNMRDEEV 429
RK + PPD S +D+ + GP R R + Q + DEE+
Sbjct: 35 RKRKTAPPDNTLSSSDDEEEGAKGPKRRDRADRLSQTVEDEEI 77
>SB_37253| Best HMM Match : Atrophin-1 (HMM E-Value=0.68)
Length = 1113
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/66 (25%), Positives = 36/66 (54%)
Frame = +2
Query: 86 PRSFTAVSSSELEPRRVSSFSLTALKERNSAQPFGSNTMIFTTPLAFSA*ASISSVGHTW 265
P + TA++ +E +++ ++ + + ++ G I TTP+A +A ++ S TW
Sbjct: 250 PNNTTAITDNETSAA-INTITVKTVGDTDT----GRIITIPTTPIASNAITTVQSKSPTW 304
Query: 266 TCHACS 283
T +AC+
Sbjct: 305 TSNACT 310
>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
Length = 1467
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +3
Query: 60 TSPYRTPLCPGLSPLSPARN*SHDGY-PASP*RL*RNGTAPSLSDRTR*YSP 212
TSP +P P SP SP+ + + Y P SP + T+PS S + YSP
Sbjct: 459 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSP 507
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +3
Query: 60 TSPYRTPLCPGLSPLSPARN*SHDGY-PASP*RL*RNGTAPSLSDRTR*YSP 212
TSP +P P SP SP+ + + Y P SP + T+PS S + YSP
Sbjct: 487 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSP 535
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +3
Query: 60 TSPYRTPLCPGLSPLSPARN*SHDGY-PASP*RL*RNGTAPSLSDRTR*YSP 212
TSP +P P SP SP+ + + Y P SP + T+PS S + YSP
Sbjct: 515 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSP 563
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +3
Query: 60 TSPYRTPLCPGLSPLSPARN*SHDGY-PASP*RL*RNGTAPSLSDRTR*YSP 212
TSP +P P SP SP+ + + Y P SP + T+PS S + YSP
Sbjct: 543 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPSSPSYSP 591
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/50 (38%), Positives = 24/50 (48%)
Frame = +3
Query: 63 SPYRTPLCPGLSPLSPARN*SHDGYPASP*RL*RNGTAPSLSDRTR*YSP 212
SP +P PG SP SP+ S SP + T+PS S + YSP
Sbjct: 430 SPSYSPTSPGYSPSSPSSGYSPASPSYSPTSPSYSPTSPSYSPTSPSYSP 479
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +3
Query: 60 TSPYRTPLCPGLSPLSPARN*SHDGYPASP*RL*RNGTAPSLSDRTR*YSP 212
+SP P P +SP SP+ + + GY S + +PS S + YSP
Sbjct: 415 SSPAFMPSSPSMSPASPSYSPTSPGYSPSSPSSGYSPASPSYSPTSPSYSP 465
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +3
Query: 60 TSPYRTPLCPGLSPLSPARN*SHDGYPASP*RL*RNGTAPSLSDRTR*YSP 212
+SP +P P SP SP + S SP + T+PS S + YSP
Sbjct: 422 SSPSMSPASPSYSPTSPGYSPSSPSSGYSPASPSYSPTSPSYSPTSPSYSP 472
>SB_38165| Best HMM Match : Drf_FH1 (HMM E-Value=1)
Length = 231
Score = 29.1 bits (62), Expect = 3.4
Identities = 23/93 (24%), Positives = 37/93 (39%)
Frame = +2
Query: 8 TPFSTYCPEYTTMATSPYIPL*DTALPRSFTAVSSSELEPRRVSSFSLTALKERNSAQPF 187
TP +Y P + +T+ Y P S+T+ +S S+ S T+ S +
Sbjct: 117 TPTPSYTPTPSYTSTTSYTPTTSYTPTPSYTSTTSYTSTTSYTSTTSYTSTPSYTSTTSY 176
Query: 188 GSNTMIFTTPLAFSA*ASISSVGHTWTCHACST 286
S T +T S + S+ +T T ST
Sbjct: 177 TSTTSYTSTTSYTSTTSYTSTTSYTSTTSYTST 209
Score = 28.3 bits (60), Expect = 6.0
Identities = 24/94 (25%), Positives = 37/94 (39%)
Frame = +2
Query: 8 TPFSTYCPEYTTMATSPYIPL*DTALPRSFTAVSSSELEPRRVSSFSLTALKERNSAQPF 187
TP ++Y P + +T+ Y P S+T+ +S P + S T S +
Sbjct: 81 TPTTSYTPTPSYTSTTSYTP------TTSYTSTTSYTPTPSYTPTPSYTPTPSYTSTTSY 134
Query: 188 GSNTMIFTTPLAFSA*ASISSVGHTWTCHACSTP 289
T TP S + S+ +T T STP
Sbjct: 135 TPTTSYTPTPSYTSTTSYTSTTSYTSTTSYTSTP 168
>SB_36151| Best HMM Match : HEAT (HMM E-Value=4.5)
Length = 423
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -3
Query: 332 MGRSEENNITQSGGTEWSKRDKS-TYDRPTISKPTR*TPAV 213
+GR++++ + SG +W D S +P +K TR PAV
Sbjct: 287 LGRAKQHGMDYSGDIDWESMDTSPVMAKPARTKRTRRLPAV 327
>SB_20479| Best HMM Match : Collagen (HMM E-Value=1)
Length = 1214
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -1
Query: 328 AAVRRITSRSPAARSGASVTSPRMTDRRYRSLRAERQR 215
AAVR T+ + R AS +P + D YR LR R
Sbjct: 276 AAVREETAPAMVVRFPASCPAPTLADHHYRQLRVSPPR 313
>SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 2639
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -1
Query: 328 AAVRRITSRSPAARSGASVTSPRMTDRRYRSLRAERQR 215
AAVR T+ + R AS +P + D YR LR R
Sbjct: 2329 AAVREETAPAMVVRFPASCPAPPLADHHYRQLRVSPPR 2366
>SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3172
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = -1
Query: 334 IWAAVRRITSRSPAARSGASVTSPRMTDRRYRSLRAERQRCGEYHRVRSERLGAVPFLQS 155
I +AVR + +R R T+ + +RYR+L R+ EYHR R+ + +++
Sbjct: 2008 IQSAVRALLARK---RFLEMKTATLILQKRYRALNHGRRERAEYHRARAAVITIQAYIRG 2064
Query: 154 RQ 149
Q
Sbjct: 2065 TQ 2066
>SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2529
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = +2
Query: 50 TSPYIPL*DTALPRSFTAVSSSELEPRRVSSFSLTALKERNSAQPFGSNTMIFTTPLAFS 229
T +PL AL R F SS ++ PRR ++ +L L+ + + P+A S
Sbjct: 1664 TKSSVPLL-AALRRCFVVASSKDVSPRRATTVTLPELRAMDDLADAADRRVAHVLPIASS 1722
>SB_24072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 822
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = -1
Query: 337 WIWAAVRRITSRSPAARSGASVTSPRMTDRRYRSL-RAERQRCGEYHRVRSERLGAV 170
WI +R + + A R A+ T +R+Y L RA +Q + + +E+L +V
Sbjct: 282 WIDHELRSLLKKKDAQRKKANKTGSLAAERKYNELRRAAKQMLSKKKKEHAEKLESV 338
>SB_59599| Best HMM Match : rve (HMM E-Value=1.69557e-43)
Length = 1803
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = -3
Query: 509 DERSAESGGPAYRRRRIIMQNMRDEEVAIAQVEEMQAVSAVLK-CRYTMTG 360
+E GG Y R+R+I+ M DE+ A + +MQA S+V +Y +TG
Sbjct: 516 EEEEEGEGGRRYSRQRVIVNGM-DEQWQ-ADLCDMQAYSSVNDGYKYILTG 564
>SB_57705| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 673
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -3
Query: 194 SIRKAGRCSVPSKPSRRSWIPVVALIPSWR 105
S+++ GR V + + WI + IP WR
Sbjct: 221 SVKRKGRYGVRLRSKKNKWIFAIQRIPHWR 250
>SB_35254| Best HMM Match : Vicilin_N (HMM E-Value=0.066)
Length = 909
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = -2
Query: 168 RSFKAVKEKLDTRRGSNSELETAVKDL 88
R ++ K+K DT + + SELET VKDL
Sbjct: 584 RRYQMAKKK-DTLQATRSELETLVKDL 609
>SB_17949| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.4)
Length = 292
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = -1
Query: 337 WIWAAVRRITSRSPAARSGASVTSPRMTDRRYRSL-RAERQRCGEYHRVRSERLGAV 170
WI +R + + A R A+ T +R+Y L RA +Q + + +E+L +V
Sbjct: 134 WIDHELRSLLKKKDAQRKKANRTGSLAAERKYNELRRAAKQMLSKKKKEHAEKLKSV 190
>SB_58282| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 433
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -3
Query: 554 RKHEVTPPDXRASHADERSAESGGPAYR-RRRIIMQNMRDEEV 429
RK + PP+ S +D+ E+ GP R R + + DEE+
Sbjct: 21 RKRKTAPPENTLSSSDDDEEEAKGPKRRDRADRLGHTVEDEEI 63
>SB_27764| Best HMM Match : RVT_1 (HMM E-Value=3.99931e-42)
Length = 715
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -1
Query: 337 WIWAAVRRITSRSPAARSGASVTSPRMTDRRYRSL-RAERQRCGEYHRVRSERLGAV 170
WI +R + + A R A+ T +R+Y L RA +Q + + E+L +V
Sbjct: 289 WIDHELRSLLKKKDAQRKKANKTGSLAAERKYNELRRAAKQMLSKKKKEHDEKLKSV 345
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,529,417
Number of Sequences: 59808
Number of extensions: 546490
Number of successful extensions: 1635
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1617
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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