Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0785
         (670 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X74874-1|CAA52862.1| 1970|Homo sapiens RNA polymerase II largest...    31   3.7  
X63564-1|CAA45125.1| 1970|Homo sapiens RNA polymerase II largest...    31   3.7  
BC132671-1|AAI32672.1|  802|Homo sapiens threonyl-tRNA synthetas...    31   3.7  
BC047376-1|AAH47376.2|  649|Homo sapiens lipolysis stimulated li...    31   3.7  
BC004381-1|AAH04381.1|  583|Homo sapiens LSR protein protein.          31   3.7  
BC000015-1|AAH00015.2|  582|Homo sapiens LSR protein protein.          31   3.7  
AL833927-1|CAD38783.1|  843|Homo sapiens hypothetical protein pr...    31   3.7  
AK126834-1|BAC86714.1|  630|Homo sapiens protein ( Homo sapiens ...    31   3.7  
AK075426-1|BAC11614.1|  583|Homo sapiens protein ( Homo sapiens ...    31   3.7  
AK056653-1|BAB71241.1|  707|Homo sapiens protein ( Homo sapiens ...    31   3.7  
AF130366-1|AAD22101.1|  591|Homo sapiens LISCH protein protein.        31   3.7  
AD000684-1|AAB51178.1|  429|Homo sapiens liver-specific bHLH-Zip...    31   3.7  
AB040976-1|BAA96067.1|  917|Homo sapiens KIAA1543 protein protein.     31   3.7  
BC150265-1|AAI50266.1| 1481|Homo sapiens CRKRS protein protein.        31   4.9  
AF227198-1|AAF36401.1| 1490|Homo sapiens CrkRS protein.                31   4.9  
AB020711-1|BAA74927.2| 1535|Homo sapiens KIAA0904 protein protein.     31   4.9  

>X74874-1|CAA52862.1| 1970|Homo sapiens RNA polymerase II largest
            subunit protein.
          Length = 1970

 Score = 31.1 bits (67), Expect = 3.7
 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +3

Query: 60   TSPYRTPLCPGLSPLSPARN*SHDGY-PASP*RL*RNGTAPSLSDRTR*YSP 212
            TSP  TP  P  SP SP+ + +   Y P SP     + T+PS S  +  YSP
Sbjct: 1751 TSPNYTPTSPSYSPTSPSYSPTSPNYTPTSP---NYSPTSPSYSPTSPSYSP 1799


>X63564-1|CAA45125.1| 1970|Homo sapiens RNA polymerase II largest
            subunit protein.
          Length = 1970

 Score = 31.1 bits (67), Expect = 3.7
 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +3

Query: 60   TSPYRTPLCPGLSPLSPARN*SHDGY-PASP*RL*RNGTAPSLSDRTR*YSP 212
            TSP  TP  P  SP SP+ + +   Y P SP     + T+PS S  +  YSP
Sbjct: 1751 TSPNYTPTSPSYSPTSPSYSPTSPNYTPTSP---NYSPTSPSYSPTSPSYSP 1799


>BC132671-1|AAI32672.1|  802|Homo sapiens threonyl-tRNA
           synthetase-like 2 protein.
          Length = 802

 Score = 31.1 bits (67), Expect = 3.7
 Identities = 19/55 (34%), Positives = 25/55 (45%)
 Frame = -1

Query: 343 LRWIWAAVRRITSRSPAARSGASVTSPRMTDRRYRSLRAERQRCGEYHRVRSERL 179
           +RW+W+ V R+      A        P +T R    LRAE   C   HR+ S RL
Sbjct: 22  IRWLWSEVERLRDEQLNAPYSCQAEGPCLT-REVAQLRAE--NCDLRHRLCSLRL 73


>BC047376-1|AAH47376.2|  649|Homo sapiens lipolysis stimulated
           lipoprotein receptor protein.
          Length = 649

 Score = 31.1 bits (67), Expect = 3.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 51  HRHTSPYRTPLCPGLSPLSPARN*SHDGYP 140
           + H SP +TP  P + P+ PA N    GYP
Sbjct: 328 YAHLSPAKTPPPPAMIPMGPAYNGYPGGYP 357


>BC004381-1|AAH04381.1|  583|Homo sapiens LSR protein protein.
          Length = 583

 Score = 31.1 bits (67), Expect = 3.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 51  HRHTSPYRTPLCPGLSPLSPARN*SHDGYP 140
           + H SP +TP  P + P+ PA N    GYP
Sbjct: 261 YAHLSPAKTPPPPAMIPMGPAYNGYPGGYP 290


>BC000015-1|AAH00015.2|  582|Homo sapiens LSR protein protein.
          Length = 582

 Score = 31.1 bits (67), Expect = 3.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 51  HRHTSPYRTPLCPGLSPLSPARN*SHDGYP 140
           + H SP +TP  P + P+ PA N    GYP
Sbjct: 260 YAHLSPAKTPPPPAMIPMGPAYNGYPGGYP 289


>AL833927-1|CAD38783.1|  843|Homo sapiens hypothetical protein
           protein.
          Length = 843

 Score = 31.1 bits (67), Expect = 3.7
 Identities = 22/70 (31%), Positives = 33/70 (47%)
 Frame = -1

Query: 295 AARSGASVTSPRMTDRRYRSLRAERQRCGEYHRVRSERLGAVPFLQSRQGEAGYPSWL*F 116
           A  S  S  S R+ ++R R++ A+++R         +RLG   FLQ +  EA   +    
Sbjct: 189 ALSSEMSELSARLEEKR-RAIEAQKRRIEAIFAKHRQRLGKSAFLQVQPREASGEAEAEA 247

Query: 115 RAGDSGERPG 86
              DSG  PG
Sbjct: 248 EEADSGPVPG 257


>AK126834-1|BAC86714.1|  630|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44886 fis, clone BRAMY2040915, moderately
           similar to Homo sapiens liver-specific bHLH-Zip
           transcription factor (LISCH7). ).
          Length = 630

 Score = 31.1 bits (67), Expect = 3.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 51  HRHTSPYRTPLCPGLSPLSPARN*SHDGYP 140
           + H SP +TP  P + P+ PA N    GYP
Sbjct: 309 YAHLSPAKTPPPPAMIPMGPAYNGYPGGYP 338


>AK075426-1|BAC11614.1|  583|Homo sapiens protein ( Homo sapiens
           cDNA PSEC0117 fis, clone PLACE1001904, moderately
           similar to LISCH protein. ).
          Length = 583

 Score = 31.1 bits (67), Expect = 3.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 51  HRHTSPYRTPLCPGLSPLSPARN*SHDGYP 140
           + H SP +TP  P + P+ PA N    GYP
Sbjct: 261 YAHLSPAKTPPPPAMIPMGPAYNGYPGGYP 290


>AK056653-1|BAB71241.1|  707|Homo sapiens protein ( Homo sapiens
           cDNA FLJ32091 fis, clone OCBBF2000824, moderately
           similar to THREONYL-TRNA SYNTHETASE, CYTOPLASMIC (EC
           6.1.1.3). ).
          Length = 707

 Score = 31.1 bits (67), Expect = 3.7
 Identities = 19/55 (34%), Positives = 25/55 (45%)
 Frame = -1

Query: 343 LRWIWAAVRRITSRSPAARSGASVTSPRMTDRRYRSLRAERQRCGEYHRVRSERL 179
           +RW+W+ V R+      A        P +T R    LRAE   C   HR+ S RL
Sbjct: 22  IRWLWSEVERLRDEQLNAPYSCQAEGPCLT-REVAQLRAE--NCDLRHRLCSLRL 73


>AF130366-1|AAD22101.1|  591|Homo sapiens LISCH protein protein.
          Length = 591

 Score = 31.1 bits (67), Expect = 3.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 51  HRHTSPYRTPLCPGLSPLSPARN*SHDGYP 140
           + H SP +TP  P + P+ PA N    GYP
Sbjct: 291 YAHLSPAKTPPPPAMIPMGPAYNGYPGGYP 320


>AD000684-1|AAB51178.1|  429|Homo sapiens liver-specific bHLH-Zip
           transcription factor protein.
          Length = 429

 Score = 31.1 bits (67), Expect = 3.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 51  HRHTSPYRTPLCPGLSPLSPARN*SHDGYP 140
           + H SP +TP  P + P+ PA N    GYP
Sbjct: 128 YAHLSPAKTPPPPAMIPMGPAYNGYPGGYP 157


>AB040976-1|BAA96067.1|  917|Homo sapiens KIAA1543 protein protein.
          Length = 917

 Score = 31.1 bits (67), Expect = 3.7
 Identities = 22/70 (31%), Positives = 33/70 (47%)
 Frame = -1

Query: 295 AARSGASVTSPRMTDRRYRSLRAERQRCGEYHRVRSERLGAVPFLQSRQGEAGYPSWL*F 116
           A  S  S  S R+ ++R R++ A+++R         +RLG   FLQ +  EA   +    
Sbjct: 263 ALSSEMSELSARLEEKR-RAIEAQKRRIEAIFAKHRQRLGKSAFLQVQPREASGEAEAEA 321

Query: 115 RAGDSGERPG 86
              DSG  PG
Sbjct: 322 EEADSGPVPG 331


>BC150265-1|AAI50266.1| 1481|Homo sapiens CRKRS protein protein.
          Length = 1481

 Score = 30.7 bits (66), Expect = 4.9
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -3

Query: 620 SPYRAEFGSRASTCEFAPGYVKRKHEVTPPDXRASHADERSAESGGPAYRRRRII 456
           SP R+   S   + + +PG   R+  V+PP    S A + S  S  P  RR+R +
Sbjct: 249 SPSRSHTSSNYDSYKKSPGSTSRRQSVSPPYKEPS-AYQSSTRSPSPYSRRQRSV 302


>AF227198-1|AAF36401.1| 1490|Homo sapiens CrkRS protein.
          Length = 1490

 Score = 30.7 bits (66), Expect = 4.9
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -3

Query: 620 SPYRAEFGSRASTCEFAPGYVKRKHEVTPPDXRASHADERSAESGGPAYRRRRII 456
           SP R+   S   + + +PG   R+  V+PP    S A + S  S  P  RR+R +
Sbjct: 249 SPSRSHTSSNYDSYKKSPGSTSRRQSVSPPYKEPS-AYQSSTRSPSPYSRRQRSV 302


>AB020711-1|BAA74927.2| 1535|Homo sapiens KIAA0904 protein protein.
          Length = 1535

 Score = 30.7 bits (66), Expect = 4.9
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -3

Query: 620 SPYRAEFGSRASTCEFAPGYVKRKHEVTPPDXRASHADERSAESGGPAYRRRRII 456
           SP R+   S   + + +PG   R+  V+PP    S A + S  S  P  RR+R +
Sbjct: 303 SPSRSHTSSNYDSYKKSPGSTSRRQSVSPPYKEPS-AYQSSTRSPSPYSRRQRSV 356


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,465,466
Number of Sequences: 237096
Number of extensions: 2511145
Number of successful extensions: 10649
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 10251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10612
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7591280850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)