Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0785
(670 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY058638-1|AAL13867.1| 492|Drosophila melanogaster LD33732p pro... 32 0.81
AY052127-1|AAK93551.1| 1062|Drosophila melanogaster SD07741p pro... 32 0.81
AE014296-326|AAF47543.2| 1062|Drosophila melanogaster CG7971-PA,... 32 0.81
AE014296-325|AAZ66051.1| 849|Drosophila melanogaster CG7971-PD,... 32 0.81
AE014296-324|AAF47542.2| 1107|Drosophila melanogaster CG7971-PC,... 32 0.81
AE013599-2703|AAF57685.1| 125|Drosophila melanogaster CG5189-PA... 31 1.9
AY051539-1|AAK92963.1| 597|Drosophila melanogaster GH19047p pro... 30 3.3
AE013599-4007|AAF47310.2| 597|Drosophila melanogaster CG3829-PA... 30 3.3
M27431-1|AAA28868.1| 1896|Drosophila melanogaster protein ( D.me... 29 4.3
M19537-1|AAA28827.1| 408|Drosophila melanogaster RNA polymerase... 29 4.3
AY089555-1|AAL90293.1| 1429|Drosophila melanogaster LD43558p pro... 29 4.3
AE014298-1637|AAF48057.1| 1887|Drosophila melanogaster CG1554-PA... 29 4.3
>AY058638-1|AAL13867.1| 492|Drosophila melanogaster LD33732p
protein.
Length = 492
Score = 31.9 bits (69), Expect = 0.81
Identities = 20/55 (36%), Positives = 28/55 (50%)
Frame = -1
Query: 313 ITSRSPAARSGASVTSPRMTDRRYRSLRAERQRCGEYHRVRSERLGAVPFLQSRQ 149
I SR R ++ T PR R+R +RQR E HR R +RL + +SR+
Sbjct: 21 IDSRQRKPRERSAATPPRKEPERHRERSKDRQRSKEKHRSR-DRLRSRERQRSRE 74
>AY052127-1|AAK93551.1| 1062|Drosophila melanogaster SD07741p
protein.
Length = 1062
Score = 31.9 bits (69), Expect = 0.81
Identities = 20/55 (36%), Positives = 28/55 (50%)
Frame = -1
Query: 313 ITSRSPAARSGASVTSPRMTDRRYRSLRAERQRCGEYHRVRSERLGAVPFLQSRQ 149
I SR R ++ T PR R+R +RQR E HR R +RL + +SR+
Sbjct: 378 IDSRQRKPRERSAATPPRKEPERHRERSKDRQRSKEKHRSR-DRLRSRERQRSRE 431
>AE014296-326|AAF47543.2| 1062|Drosophila melanogaster CG7971-PA,
isoform A protein.
Length = 1062
Score = 31.9 bits (69), Expect = 0.81
Identities = 20/55 (36%), Positives = 28/55 (50%)
Frame = -1
Query: 313 ITSRSPAARSGASVTSPRMTDRRYRSLRAERQRCGEYHRVRSERLGAVPFLQSRQ 149
I SR R ++ T PR R+R +RQR E HR R +RL + +SR+
Sbjct: 378 IDSRQRKPRERSAATPPRKEPERHRERSKDRQRSKEKHRSR-DRLRSRERQRSRE 431
>AE014296-325|AAZ66051.1| 849|Drosophila melanogaster CG7971-PD,
isoform D protein.
Length = 849
Score = 31.9 bits (69), Expect = 0.81
Identities = 20/55 (36%), Positives = 28/55 (50%)
Frame = -1
Query: 313 ITSRSPAARSGASVTSPRMTDRRYRSLRAERQRCGEYHRVRSERLGAVPFLQSRQ 149
I SR R ++ T PR R+R +RQR E HR R +RL + +SR+
Sbjct: 378 IDSRQRKPRERSAATPPRKEPERHRERSKDRQRSKEKHRSR-DRLRSRERQRSRE 431
>AE014296-324|AAF47542.2| 1107|Drosophila melanogaster CG7971-PC,
isoform C protein.
Length = 1107
Score = 31.9 bits (69), Expect = 0.81
Identities = 20/55 (36%), Positives = 28/55 (50%)
Frame = -1
Query: 313 ITSRSPAARSGASVTSPRMTDRRYRSLRAERQRCGEYHRVRSERLGAVPFLQSRQ 149
I SR R ++ T PR R+R +RQR E HR R +RL + +SR+
Sbjct: 378 IDSRQRKPRERSAATPPRKEPERHRERSKDRQRSKEKHRSR-DRLRSRERQRSRE 431
>AE013599-2703|AAF57685.1| 125|Drosophila melanogaster CG5189-PA
protein.
Length = 125
Score = 30.7 bits (66), Expect = 1.9
Identities = 19/57 (33%), Positives = 25/57 (43%)
Frame = +3
Query: 279 APLRAAGLRDVILLTAAHIHLNRIEGFTGHGVSALKHGRNCLHLFDLSNGHLFVTHV 449
A L +G D A I N + HG +A + GR L D NGH+ +T V
Sbjct: 30 ALLAYSGYGDKDARITAAIASNIWAAYEKHGRNAFREGRLTFVLIDCENGHVAITQV 86
>AY051539-1|AAK92963.1| 597|Drosophila melanogaster GH19047p
protein.
Length = 597
Score = 29.9 bits (64), Expect = 3.3
Identities = 20/55 (36%), Positives = 25/55 (45%)
Frame = +1
Query: 130 TGIQLLLDGFEGTEQRPAFRIEHDDIHHTAGVQRVGFDIVGRSYVDLSRLLHSVP 294
TG +L FEG E A + DIH R GF I G S V ++ +L P
Sbjct: 428 TGDPVLYQDFEGIEPDAAVHQTYADIH-----PRFGFPISGASRVQINIMLDKTP 477
>AE013599-4007|AAF47310.2| 597|Drosophila melanogaster CG3829-PA
protein.
Length = 597
Score = 29.9 bits (64), Expect = 3.3
Identities = 20/55 (36%), Positives = 25/55 (45%)
Frame = +1
Query: 130 TGIQLLLDGFEGTEQRPAFRIEHDDIHHTAGVQRVGFDIVGRSYVDLSRLLHSVP 294
TG +L FEG E A + DIH R GF I G S V ++ +L P
Sbjct: 428 TGDPVLYQDFEGIEPDAAVHQTYADIH-----PRFGFPISGASRVQINIMLDKTP 477
>M27431-1|AAA28868.1| 1896|Drosophila melanogaster protein (
D.melanogaster RpII215gene encoding RNA polymerase II,
largest subunit, completecds. ).
Length = 1896
Score = 29.5 bits (63), Expect = 4.3
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +3
Query: 60 TSPYRTPLCPGLSPLSPARN*SHDGYPASP 149
TSP TP+ P SP SP + S PASP
Sbjct: 1718 TSPNYTPVTPSYSPTSPNYSASPQYSPASP 1747
>M19537-1|AAA28827.1| 408|Drosophila melanogaster RNA polymerase II
largest subunit protein.
Length = 408
Score = 29.5 bits (63), Expect = 4.3
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +3
Query: 60 TSPYRTPLCPGLSPLSPARN*SHDGYPASP 149
TSP TP+ P SP SP + S PASP
Sbjct: 237 TSPNYTPVTPSYSPTSPNYSASPQYSPASP 266
>AY089555-1|AAL90293.1| 1429|Drosophila melanogaster LD43558p protein.
Length = 1429
Score = 29.5 bits (63), Expect = 4.3
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +3
Query: 60 TSPYRTPLCPGLSPLSPARN*SHDGYPASP 149
TSP TP+ P SP SP + S PASP
Sbjct: 1258 TSPNYTPVTPSYSPTSPNYSASPQYSPASP 1287
>AE014298-1637|AAF48057.1| 1887|Drosophila melanogaster CG1554-PA
protein.
Length = 1887
Score = 29.5 bits (63), Expect = 4.3
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +3
Query: 60 TSPYRTPLCPGLSPLSPARN*SHDGYPASP 149
TSP TP+ P SP SP + S PASP
Sbjct: 1716 TSPNYTPVTPSYSPTSPNYSASPQYSPASP 1745
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,861,481
Number of Sequences: 53049
Number of extensions: 784404
Number of successful extensions: 2447
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2447
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2889369000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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