Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0785
(670 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 31 0.56
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 31 0.56
Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical pr... 30 1.7
AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein. 30 1.7
AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical ... 29 3.9
AC006620-1|AAF39780.1| 754|Caenorhabditis elegans Hypothetical ... 29 3.9
Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical pr... 28 5.2
Z35595-5|CAA84636.1| 952|Caenorhabditis elegans Hypothetical pr... 28 5.2
X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase... 28 5.2
D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosi... 28 5.2
AF003134-6|AAB54146.3| 827|Caenorhabditis elegans Hypothetical ... 28 5.2
AC024817-16|AAF59585.2| 610|Caenorhabditis elegans Hypothetical... 28 5.2
AC084159-2|AAK39359.1| 659|Caenorhabditis elegans Hypothetical ... 28 6.9
U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated p... 27 9.1
U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated p... 27 9.1
M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related... 27 9.1
AL032653-3|CAA21713.1| 861|Caenorhabditis elegans Hypothetical ... 27 9.1
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 31.5 bits (68), Expect = 0.56
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = +3
Query: 60 TSPYRTPLCPGLSPLSPARN*SHDGYPASP*RL*RNGTAPSLSDRTR*YSP 212
TSP+ +P P SP SPA S SP + T+PS S + YSP
Sbjct: 1585 TSPHYSPTSPSYSPTSPAAGQSPVSPSYSPTSPSYSPTSPSYSPTSPSYSP 1635
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +3
Query: 60 TSPYRTPLCPGLSPLSPARN*SHDGYPASP*RL*RNGTAPSLSDRTR*YSP 212
TSP +P P SP SP+ + S Y S R + T+P+ S + YSP
Sbjct: 1643 TSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPRY--SPTSPTYSPTSPTYSP 1691
Score = 29.5 bits (63), Expect = 2.3
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +3
Query: 60 TSPYRTPLCPGLSPLSPARN*SHDGY-PASP*RL*RNGTAPSLSDRTR*YSP 212
TSP +P P SP SP+ + + Y P SP + T+PS S + YSP
Sbjct: 1615 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPSSPSYSP 1663
Score = 28.3 bits (60), Expect = 5.2
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +3
Query: 60 TSPYRTPLCPGLSPLSPARN*SHDGY-PASP*RL*RNGTAPSLSDRTR*YSP 212
TSP +P P SP SP+ + + Y P+SP + ++PS S + YSP
Sbjct: 1629 TSPSYSPTSPSYSPTSPSYSPTSPSYSPSSP---SYSPSSPSYSPSSPRYSP 1677
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 31.5 bits (68), Expect = 0.56
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = +3
Query: 60 TSPYRTPLCPGLSPLSPARN*SHDGYPASP*RL*RNGTAPSLSDRTR*YSP 212
TSP+ +P P SP SPA S SP + T+PS S + YSP
Sbjct: 1592 TSPHYSPTSPSYSPTSPAAGQSPVSPSYSPTSPSYSPTSPSYSPTSPSYSP 1642
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +3
Query: 60 TSPYRTPLCPGLSPLSPARN*SHDGYPASP*RL*RNGTAPSLSDRTR*YSP 212
TSP +P P SP SP+ + S Y S R + T+P+ S + YSP
Sbjct: 1650 TSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPRY--SPTSPTYSPTSPTYSP 1698
Score = 29.5 bits (63), Expect = 2.3
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +3
Query: 60 TSPYRTPLCPGLSPLSPARN*SHDGY-PASP*RL*RNGTAPSLSDRTR*YSP 212
TSP +P P SP SP+ + + Y P SP + T+PS S + YSP
Sbjct: 1622 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPSSPSYSP 1670
Score = 28.3 bits (60), Expect = 5.2
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +3
Query: 60 TSPYRTPLCPGLSPLSPARN*SHDGY-PASP*RL*RNGTAPSLSDRTR*YSP 212
TSP +P P SP SP+ + + Y P+SP + ++PS S + YSP
Sbjct: 1636 TSPSYSPTSPSYSPTSPSYSPTSPSYSPSSP---SYSPSSPSYSPSSPRYSP 1684
>Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical
protein K04G2.8b protein.
Length = 1188
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = -2
Query: 213 VVNIIVFDPKGWALFRSFKAVKEKLDTRRGSN-SELETAVKDLGKAVSY--KGMYGDVAI 43
+ N+IV DP + R A ++L+ R SN ++ TAVK + ++ YGD++
Sbjct: 383 IANLIVKDPHMQQMIRQDMAAVQQLNVLRNSNRDDIRTAVKSVLNTLNQPCSHRYGDMSH 442
Query: 42 VVYSG 28
V G
Sbjct: 443 SVGGG 447
>Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical
protein K04G2.8a protein.
Length = 1186
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = -2
Query: 213 VVNIIVFDPKGWALFRSFKAVKEKLDTRRGSN-SELETAVKDLGKAVSY--KGMYGDVAI 43
+ N+IV DP + R A ++L+ R SN ++ TAVK + ++ YGD++
Sbjct: 383 IANLIVKDPHMQQMIRQDMAAVQQLNVLRNSNRDDIRTAVKSVLNTLNQPCSHRYGDMSH 442
Query: 42 VVYSG 28
V G
Sbjct: 443 SVGGG 447
>AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein.
Length = 1186
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = -2
Query: 213 VVNIIVFDPKGWALFRSFKAVKEKLDTRRGSN-SELETAVKDLGKAVSY--KGMYGDVAI 43
+ N+IV DP + R A ++L+ R SN ++ TAVK + ++ YGD++
Sbjct: 383 IANLIVKDPHMQQMIRQDMAAVQQLNVLRNSNRDDIRTAVKSVLNTLNQPCSHRYGDMSH 442
Query: 42 VVYSG 28
V G
Sbjct: 443 SVGGG 447
>AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical
protein Y79H2A.3a protein.
Length = 2129
Score = 28.7 bits (61), Expect = 3.9
Identities = 19/56 (33%), Positives = 23/56 (41%)
Frame = -1
Query: 319 RRITSRSPAARSGASVTSPRMTDRRYRSLRAERQRCGEYHRVRSERLGAVPFLQSR 152
+R SRS R + S + RYRS R R R R RS P +SR
Sbjct: 1528 KRARSRSAERRRRSRTRSRSRSRERYRSRRDRRSRTKSRSRSRSREAAPPPQQRSR 1583
>AC006620-1|AAF39780.1| 754|Caenorhabditis elegans Hypothetical
protein C51G7.3 protein.
Length = 754
Score = 28.7 bits (61), Expect = 3.9
Identities = 19/56 (33%), Positives = 23/56 (41%)
Frame = -1
Query: 319 RRITSRSPAARSGASVTSPRMTDRRYRSLRAERQRCGEYHRVRSERLGAVPFLQSR 152
+R SRS R + S + RYRS R R R R RS P +SR
Sbjct: 153 KRARSRSAERRRRSRTRSRSRSRERYRSRRDRRSRTKSRSRSRSREAAPPPQQRSR 208
>Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical
protein ZK1067.1 protein.
Length = 1323
Score = 28.3 bits (60), Expect = 5.2
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -3
Query: 83 KRCPIRGCMAMWPSSCIPDSTWKT 12
K C RGC P C+ TWK+
Sbjct: 522 KNCNKRGCWGKEPEDCLECKTWKS 545
>Z35595-5|CAA84636.1| 952|Caenorhabditis elegans Hypothetical
protein C01G6.5 protein.
Length = 952
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +1
Query: 121 RATTGIQLLLDGFEGTEQRPAFRIE-HDDIHHT 216
RATT + LDG E E P F H +HHT
Sbjct: 43 RATTNDVIFLDGTEHVELEPQFISRCHARVHHT 75
>X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase
protein.
Length = 1323
Score = 28.3 bits (60), Expect = 5.2
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -3
Query: 83 KRCPIRGCMAMWPSSCIPDSTWKT 12
K C RGC P C+ TWK+
Sbjct: 522 KNCNKRGCWGKEPEDCLECKTWKS 545
>D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosine
kinase protein.
Length = 1374
Score = 28.3 bits (60), Expect = 5.2
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -3
Query: 83 KRCPIRGCMAMWPSSCIPDSTWKT 12
K C RGC P C+ TWK+
Sbjct: 573 KNCNKRGCWGKEPEDCLECKTWKS 596
>AF003134-6|AAB54146.3| 827|Caenorhabditis elegans Hypothetical
protein ZC581.9 protein.
Length = 827
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +1
Query: 130 TGIQLLLDGFEGTEQRPAFRIEHDDIHHTAGVQRVGFDIVGRSYVDLSRLLHS 288
+ +++LLD E R EH +H G+ R+G V S +L R++ S
Sbjct: 617 SSVRILLDVLEQRRYEMEDRQEHKQSNHHLGLNRLGNRRVSMSSTNLPRVMIS 669
>AC024817-16|AAF59585.2| 610|Caenorhabditis elegans Hypothetical
protein Y54G2A.13 protein.
Length = 610
Score = 28.3 bits (60), Expect = 5.2
Identities = 22/89 (24%), Positives = 41/89 (46%)
Frame = -3
Query: 377 RYTMTGEAFDPVEVDMGRSEENNITQSGGTEWSKRDKSTYDRPTISKPTR*TPAVW*ISS 198
+++ T EA P ++E ++T T ++++++T D T S PT TP +
Sbjct: 179 KHSTTEEATSP-----SQNETTSVTTQNPTTSNQKNETT-DEATSSPPTTTTPTTTLKPT 232
Query: 197 CSIRKAGRCSVPSKPSRRSWIPVVALIPS 111
S +K + PS+ + PV P+
Sbjct: 233 TSPQKPDSTEEATSPSQSTTTPVATQNPT 261
>AC084159-2|AAK39359.1| 659|Caenorhabditis elegans Hypothetical
protein Y73B3A.1 protein.
Length = 659
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 188 RKAGRCSVPSKPSRRSWIP 132
RKAG CS P +RR +IP
Sbjct: 529 RKAGECSTPPAVTRRGFIP 547
>U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated
protein 104, isoforma protein.
Length = 1584
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = +1
Query: 238 FDIVGRSYVDLSRLLHSVP 294
F +VGR++V L+ LLH+VP
Sbjct: 823 FRMVGRAFVYLNNLLHNVP 841
>U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated
protein 104, isoformb protein.
Length = 1628
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = +1
Query: 238 FDIVGRSYVDLSRLLHSVP 294
F +VGR++V L+ LLH+VP
Sbjct: 870 FRMVGRAFVYLNNLLHNVP 888
>M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related
protein protein.
Length = 1584
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = +1
Query: 238 FDIVGRSYVDLSRLLHSVP 294
F +VGR++V L+ LLH+VP
Sbjct: 823 FRMVGRAFVYLNNLLHNVP 841
>AL032653-3|CAA21713.1| 861|Caenorhabditis elegans Hypothetical
protein Y54E5B.2 protein.
Length = 861
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +1
Query: 208 HHTAGVQRVGFD---IVGRSYVDLSRLLHSVPPDCVMLFSSLRPISTST 345
+HT+ + ++ +VG D +R+ H+V DC ++ SS+ P +TS+
Sbjct: 782 YHTSTITKIHSHLSTVVGIVVTDRNRI-HTVSLDCAVVTSSMSPSATSS 829
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,536,438
Number of Sequences: 27780
Number of extensions: 367151
Number of successful extensions: 1136
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1132
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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