Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0785
         (670 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    25   0.86 
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   2.6  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    23   3.5  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          22   4.6  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          22   4.6  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          22   4.6  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   4.6  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          22   4.6  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   4.6  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   4.6  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    22   4.6  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 24.6 bits (51), Expect = 0.86
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 503 SHRHATHGXLAESLHASA*HIPAQIHMWKPGY 598
           S RH+T   +AE LH S  H   + H+ + GY
Sbjct: 80  SDRHSTTREIAEKLHVS--HTCIENHLKQLGY 109


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 423 NGHLFVTHVLHDDATAAVSGSARFCGSLIGMRR 521
           NG +F + + H         S+ FCG  IGM+R
Sbjct: 130 NGEVFPSKMDHQ--LPLKQRSSEFCGKNIGMKR 160


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +2

Query: 320 HCGPYPPQP 346
           HCG +PP+P
Sbjct: 351 HCGNFPPRP 359


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 253 DRRYRSLRAERQRCGEYHRVRSERL 179
           D R+R  R+E    G   R + ERL
Sbjct: 12  DERFRQSRSEDSETGLRSRTQEERL 36


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 253 DRRYRSLRAERQRCGEYHRVRSERL 179
           D R+R  R+E    G   R + ERL
Sbjct: 12  DERFRQSRSEDSETGLRSRTQEERL 36


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 253 DRRYRSLRAERQRCGEYHRVRSERL 179
           D R+R  R+E    G   R + ERL
Sbjct: 12  DERFRQSRSEDSETGLRSRTQEERL 36


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 253 DRRYRSLRAERQRCGEYHRVRSERL 179
           D R+R  R+E    G   R + ERL
Sbjct: 12  DERFRQSRSEDSETGLRSRTQEERL 36


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 253 DRRYRSLRAERQRCGEYHRVRSERL 179
           D R+R  R+E    G   R + ERL
Sbjct: 12  DERFRQSRSEDSETGLRSRTQEERL 36


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 253 DRRYRSLRAERQRCGEYHRVRSERL 179
           D R+R  R+E    G   R + ERL
Sbjct: 12  DERFRQSRSEDSETGLRSRTQEERL 36


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 253 DRRYRSLRAERQRCGEYHRVRSERL 179
           D R+R  R+E    G   R + ERL
Sbjct: 12  DERFRQSRSEDSETGLRSRTQEERL 36


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 253 DRRYRSLRAERQRCGEYHRVRSERL 179
           D R+R  R+E    G   R + ERL
Sbjct: 12  DERFRQSRSEDSETGLRSRTQEERL 36


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,837
Number of Sequences: 438
Number of extensions: 4334
Number of successful extensions: 15
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)