Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0785
(670 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest ... 35 0.056
At4g35080.2 68417.m04981 high-affinity nickel-transport family p... 29 2.8
At4g35080.1 68417.m04980 high-affinity nickel-transport family p... 29 2.8
At3g55360.1 68416.m06148 3-oxo-5-alpha-steroid 4-dehydrogenase f... 29 2.8
At3g43430.1 68416.m04597 zinc finger (C3HC4-type RING finger) fa... 29 2.8
At2g20950.4 68415.m02474 expressed protein 29 2.8
At2g20950.3 68415.m02473 expressed protein 29 2.8
At2g20950.2 68415.m02472 expressed protein 29 2.8
At2g20950.1 68415.m02471 expressed protein 29 2.8
At2g30900.1 68415.m03766 expressed protein 29 3.7
At3g42723.1 68416.m04459 hypothetical protein 28 4.9
At5g50130.2 68418.m06208 short-chain dehydrogenase/reductase (SD... 28 6.5
At5g50130.1 68418.m06209 short-chain dehydrogenase/reductase (SD... 28 6.5
At5g36790.1 68418.m04408 phosphoglycolate phosphatase, putative ... 28 6.5
At5g36700.1 68418.m04392 phosphoglycolate phosphatase, putative ... 28 6.5
At4g29880.1 68417.m04252 leucine-rich repeat family protein cont... 28 6.5
At1g63600.1 68414.m07189 protein kinase-related low similarity t... 28 6.5
At4g16144.1 68417.m02448 expressed protein 27 8.5
At3g52250.1 68416.m05742 myb family transcription factor contain... 27 8.5
At1g17140.2 68414.m02089 tropomyosin-related similar to Tropomyo... 27 8.5
At1g17140.1 68414.m02088 tropomyosin-related similar to Tropomyo... 27 8.5
>At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest
subunit (RPB205) (RPII) (RPB1) nearly identical to
P|P18616 DNA-directed RNA polymerase II largest subunit
(EC 2.7.7.6) {Arabidopsis thaliana}
Length = 1840
Score = 34.7 bits (76), Expect = 0.056
Identities = 23/52 (44%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +3
Query: 60 TSPYRTPLCPGLSPLSPARN*SHDGY-PASP*RL*RNGTAPSLSDRTR*YSP 212
TSP +P PG SP SP + S GY P SP + T+PS S + YSP
Sbjct: 1562 TSPGYSPTSPGYSPTSPTYSPSSPGYSPTSP---AYSPTSPSYSPTSPSYSP 1610
Score = 30.7 bits (66), Expect = 0.92
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +3
Query: 60 TSPYRTPLCPGLSPLSPARN*SHDGY-PASP*RL*RNGTAPSLSDRTR*YSP 212
TSP +P P SP SPA + + Y P SP + T+PS S + YSP
Sbjct: 1625 TSPSYSPTSPSYSPTSPAYSPTSPAYSPTSP---AYSPTSPSYSPTSPSYSP 1673
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +3
Query: 60 TSPYRTPLCPGLSPLSPARN*SHDGY-PASP*RL*RNGTAPSLSDRTR*YSP 212
+SP +P PG SP SP + + GY P SP + T+P+ S + YSP
Sbjct: 1541 SSPGYSPSSPGYSPTSPGYSPTSPGYSPTSP---GYSPTSPTYSPSSPGYSP 1589
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +3
Query: 60 TSPYRTPLCPGLSPLSPARN*SHDGY-PASP*RL*RNGTAPSLSDRTR*YSP 212
TSP +P P SP SPA + + GY P SP + T+PS + Y+P
Sbjct: 1681 TSPSYSPTSPSYSPTSPAYSPTSPGYSPTSP---SYSPTSPSYGPTSPSYNP 1729
Score = 29.5 bits (63), Expect = 2.1
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +3
Query: 60 TSPYRTPLCPGLSPLSPARN*SHDGY-PASP*RL*RNGTAPSLSDRTR*YSP 212
TSP +P P SP SP+ + + Y P SP + T+PS S + YSP
Sbjct: 1590 TSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSP 1638
Score = 29.5 bits (63), Expect = 2.1
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +3
Query: 60 TSPYRTPLCPGLSPLSPARN*SHDGY-PASP*RL*RNGTAPSLSDRTR*YSP 212
TSP +P P SP SP+ + + Y P SP + T+PS S + YSP
Sbjct: 1653 TSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTSPAYSP 1701
Score = 29.5 bits (63), Expect = 2.1
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +3
Query: 48 PHRHTSPYRTPLCPGLSPLSPARN*SHDGY-PASP*RL*RNGTAPSLSDRTR*YSP 212
P+ TSP +P P SP SP+ + S Y P+SP +G +P S YSP
Sbjct: 1752 PYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSP---YSSGASPDYSPSAG-YSP 1803
Score = 28.7 bits (61), Expect = 3.7
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +3
Query: 60 TSPYRTPLCPGLSPLSPARN*SHDGY-PASP*RL*RNGTAPSLSDRTR*YSP 212
+SP +P PG SP SP + + GY P SP + ++P S + YSP
Sbjct: 1548 SSPGYSPTSPGYSPTSPGYSPTSPGYSPTSP---TYSPSSPGYSPTSPAYSP 1596
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +3
Query: 60 TSPYRTPLCPGLSPLSPARN*SHDGY-PASP*RL*RNGTAPSLSDRTR*YSP 212
TSP +P P SP SP+ + + Y P SP + T+P+ S + YSP
Sbjct: 1618 TSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP---AYSPTSPAYSPTSPSYSP 1666
>At4g35080.2 68417.m04981 high-affinity nickel-transport family
protein contains Pfam domain, PF03824: High-affinity
nickel-transport protein
Length = 336
Score = 29.1 bits (62), Expect = 2.8
Identities = 20/61 (32%), Positives = 30/61 (49%)
Frame = +2
Query: 17 STYCPEYTTMATSPYIPL*DTALPRSFTAVSSSELEPRRVSSFSLTALKERNSAQPFGSN 196
S+ P TSP++P ++ + VS+ E RRVSS S + + + P GSN
Sbjct: 12 SSISPSKFPSRTSPFLPRLRSS---GLSFVSTHRPESRRVSSISCNSSQIPSLYTPIGSN 68
Query: 197 T 199
T
Sbjct: 69 T 69
>At4g35080.1 68417.m04980 high-affinity nickel-transport family
protein contains Pfam domain, PF03824: High-affinity
nickel-transport protein
Length = 365
Score = 29.1 bits (62), Expect = 2.8
Identities = 20/61 (32%), Positives = 30/61 (49%)
Frame = +2
Query: 17 STYCPEYTTMATSPYIPL*DTALPRSFTAVSSSELEPRRVSSFSLTALKERNSAQPFGSN 196
S+ P TSP++P ++ + VS+ E RRVSS S + + + P GSN
Sbjct: 12 SSISPSKFPSRTSPFLPRLRSS---GLSFVSTHRPESRRVSSISCNSSQIPSLYTPIGSN 68
Query: 197 T 199
T
Sbjct: 69 T 69
>At3g55360.1 68416.m06148 3-oxo-5-alpha-steroid 4-dehydrogenase
family protein / steroid 5-alpha-reductase family
protein similar to synaptic glycoprotein SC2 spliced
variant from Homo sapiens [EMBL:AF038958], SC2 from
Rattus sp. [gi:256994]; contains Pfam
3-oxo-5-alpha-steroid 4-dehydrogenase domain PF02544
Length = 310
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = -2
Query: 174 LFRSFKAVKEKLDTRRGSNSELETAVKDLGKAVSYKGMY 58
+ S K++KE D G+N+ L KDLG VSY+ ++
Sbjct: 61 VLNSKKSLKEYCD---GNNNSLTVVFKDLGAQVSYRTLF 96
>At3g43430.1 68416.m04597 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 167
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -1
Query: 343 LRWIWAAVRRITSRSPAARSGASVTSPRMTDR 248
LRWI+A + R SRS ++ S S +SP ++ +
Sbjct: 26 LRWIFAWILRYRSRSSSSSSSQSSSSPSISSQ 57
>At2g20950.4 68415.m02474 expressed protein
Length = 530
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = -2
Query: 156 AVKEKLDTRRGSNSELETAVKDLGKAVSYKGMYGDVAIV 40
AV + +D+ + S L+TAV +L +AV Y G Y IV
Sbjct: 417 AVVKDMDSVKIDVSWLKTAVTELAEAVEYYGKYDTAKIV 455
>At2g20950.3 68415.m02473 expressed protein
Length = 505
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = -2
Query: 156 AVKEKLDTRRGSNSELETAVKDLGKAVSYKGMYGDVAIV 40
AV + +D+ + S L+TAV +L +AV Y G Y IV
Sbjct: 392 AVVKDMDSVKIDVSWLKTAVTELAEAVEYYGKYDTAKIV 430
>At2g20950.2 68415.m02472 expressed protein
Length = 503
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = -2
Query: 156 AVKEKLDTRRGSNSELETAVKDLGKAVSYKGMYGDVAIV 40
AV + +D+ + S L+TAV +L +AV Y G Y IV
Sbjct: 390 AVVKDMDSVKIDVSWLKTAVTELAEAVEYYGKYDTAKIV 428
>At2g20950.1 68415.m02471 expressed protein
Length = 520
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = -2
Query: 156 AVKEKLDTRRGSNSELETAVKDLGKAVSYKGMYGDVAIV 40
AV + +D+ + S L+TAV +L +AV Y G Y IV
Sbjct: 407 AVVKDMDSVKIDVSWLKTAVTELAEAVEYYGKYDTAKIV 445
>At2g30900.1 68415.m03766 expressed protein
Length = 367
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 22 VLSGIHDDGHIAIHPLIGHRFAQVFHRCL 108
++S + DGH +++ GHR A H CL
Sbjct: 321 LMSQLRKDGHPSVYGFGGHRMADCSHWCL 349
>At3g42723.1 68416.m04459 hypothetical protein
Length = 806
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 124 ATTGIQLLLDGFEGTEQRPAFRIEHDDIHHTA 219
A I++L GF+GT + A +EHD I A
Sbjct: 195 AADSIRVLYIGFQGTAPQVAMEVEHDIISRDA 226
>At5g50130.2 68418.m06208 short-chain dehydrogenase/reductase (SDR)
family protein contains INTERPRO family IPR002198
Short-chain dehydrogenase/reductase (SDR) superfamily
Length = 277
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +1
Query: 244 IVGRSYVDLSRLLHS-VPPDCVMLFSSLRPISTSTGSKA 357
I GR ++LS ++H+ V PDC L PIS G++A
Sbjct: 168 IEGR-IINLSSVIHNWVKPDCFSFPKLLHPISRYNGTRA 205
>At5g50130.1 68418.m06209 short-chain dehydrogenase/reductase (SDR)
family protein contains INTERPRO family IPR002198
Short-chain dehydrogenase/reductase (SDR) superfamily
Length = 339
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +1
Query: 244 IVGRSYVDLSRLLHS-VPPDCVMLFSSLRPISTSTGSKA 357
I GR ++LS ++H+ V PDC L PIS G++A
Sbjct: 168 IEGR-IINLSSVIHNWVKPDCFSFPKLLHPISRYNGTRA 205
>At5g36790.1 68418.m04408 phosphoglycolate phosphatase, putative
similar to phosphoglycolate phosphatase precursor
[Chlamydomonas reinhardtii] GI:15982558; contains
InterPro accession IPR005834: Haloacid dehalogenase-like
hydrolase
Length = 362
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +1
Query: 151 DGFEGTEQRPAFRIEHDDIHHTAGVQRVGFDIVGRSY-VDLSRLLHSVPPDCVMLFSSLR 327
DG E +P F +EHD H G VGFD Y + L P C+ + ++
Sbjct: 191 DGKRQIELKPGFLMEHD---HDVGAVVVGFDRYFNYYKIQYGTLCIRENPGCLFIATNRD 247
Query: 328 PISTSTGSK 354
++ T ++
Sbjct: 248 AVTHLTDAQ 256
>At5g36700.1 68418.m04392 phosphoglycolate phosphatase, putative
similar to phosphoglycolate phosphatase precursor
[Chlamydomonas reinhardtii] GI:15982558; contains
InterPro accession IPR005834: Haloacid dehalogenase-like
hydrolase
Length = 362
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +1
Query: 151 DGFEGTEQRPAFRIEHDDIHHTAGVQRVGFDIVGRSY-VDLSRLLHSVPPDCVMLFSSLR 327
DG E +P F +EHD H G VGFD Y + L P C+ + ++
Sbjct: 191 DGKRQIELKPGFLMEHD---HDVGAVVVGFDRYFNYYKIQYGTLCIRENPGCLFIATNRD 247
Query: 328 PISTSTGSK 354
++ T ++
Sbjct: 248 AVTHLTDAQ 256
>At4g29880.1 68417.m04252 leucine-rich repeat family protein
contains leucine rich repeats, Pfam:PF00560
Length = 404
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +3
Query: 60 TSPYRTPLCPGLSPLSPARN 119
TSP +PL P LSP SP+ N
Sbjct: 29 TSPPSSPLSPSLSPKSPSYN 48
>At1g63600.1 68414.m07189 protein kinase-related low similarity to
receptor-like protein kinase 5 [Arabidopsis thaliana]
GI:13506747; contains Pfam profile: PF01657 Domain of
unknown function DUF26
Length = 302
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/54 (27%), Positives = 21/54 (38%)
Frame = -1
Query: 511 PMRDPQNLADPLTAAVASSCRTCVTKRWPLLRSKRCRQFLPCLSADTP*PVKPS 350
P DP+N L AV C RW + + +C + +P P PS
Sbjct: 209 PDLDPRNCTTCLKLAVQEMLECCNQSRWAQIFTPKCLLRYEATALSSPPPPYPS 262
>At4g16144.1 68417.m02448 expressed protein
Length = 390
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -3
Query: 299 SGGTEWSKRDKSTYDRPTISKPTR*TPAVW 210
S EW K++Y RP I+KP + W
Sbjct: 124 SDAVEWPPAHKASYSRPDINKPLPTSQPSW 153
>At3g52250.1 68416.m05742 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 1677
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 190 IEHDDIHHTAGVQRVGFDIVGRSYVDLSRLLHSVPPD-CVMLFSSLR 327
I D +A +Q GF + G+++ +SR + + PD C + FS +R
Sbjct: 1109 IHWTDDERSAFIQ--GFSLFGKNFASISRYVGTRSPDQCKVFFSKVR 1153
>At1g17140.2 68414.m02089 tropomyosin-related similar to Tropomyosin
1. [Baker's yeast](SP:P17536) {Saccharomyces cerevisiae}
Length = 344
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -2
Query: 153 VKEKLDTRRGSNSELETAVKDLGKAVSYKGMYGDVAIVVYSGQYVENG 10
+KEKL++ + LE +K L D A V SG++ NG
Sbjct: 238 LKEKLESMEEAKDALEAEMKKLRVQTEQWRKAADAAAAVLSGEFEMNG 285
>At1g17140.1 68414.m02088 tropomyosin-related similar to Tropomyosin
1. [Baker's yeast](SP:P17536) {Saccharomyces cerevisiae}
Length = 344
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -2
Query: 153 VKEKLDTRRGSNSELETAVKDLGKAVSYKGMYGDVAIVVYSGQYVENG 10
+KEKL++ + LE +K L D A V SG++ NG
Sbjct: 238 LKEKLESMEEAKDALEAEMKKLRVQTEQWRKAADAAAAVLSGEFEMNG 285
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,017,354
Number of Sequences: 28952
Number of extensions: 356645
Number of successful extensions: 1150
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1135
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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