Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0784
         (659 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    24   0.96 
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    24   0.96 
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    24   0.96 
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    23   1.7  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   9.0  

>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 24.2 bits (50), Expect = 0.96
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 107 LVQPQSAHVVCYQGQWSSF 51
           LV   +  VVCY G WS++
Sbjct: 18  LVSATTDKVVCYWGTWSTY 36


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 0.96
 Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +1

Query: 157 LVYQKSEDRERIR*PC--SPATCSFTERESRSPKVCWFY 267
           L ++ S   E ++ P   SP  C+   RE   P++C+++
Sbjct: 86  LDFRNSATAELLKNPSLSSPDECARACREGEPPRICYYH 124


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 24.2 bits (50), Expect = 0.96
 Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +1

Query: 157 LVYQKSEDRERIR*PC--SPATCSFTERESRSPKVCWFY 267
           L ++ S   E ++ P   SP  C+   RE   P++C+++
Sbjct: 86  LDFRNSATAELLKNPSLSSPDECARACREGEPPRICYYH 124


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 107 LVQPQSAHVVCYQGQWSSF 51
           +V   +  VVCY G WS++
Sbjct: 14  IVSAATNKVVCYHGIWSTY 32


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -3

Query: 603 SPSFSRKSAQPLSSGVPLPISKLTHFQLIIASQP 502
           +P+FS +    +S GV   +  +  FQL   + P
Sbjct: 14  APAFSEQRGGVISEGVASSLQVVALFQLSETTAP 47


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,872
Number of Sequences: 336
Number of extensions: 3668
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)