Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0784
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.2  
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    25   7.3  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    25   9.7  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    25   9.7  
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce...    25   9.7  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    25   9.7  

>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1379

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -3

Query: 630 SGKKEFII*SPSFSRKSAQPLSSGVPLP 547
           +G  +  I S  F  KSA+PLSS +PLP
Sbjct: 328 NGASKLAIESQPF--KSAEPLSSAIPLP 353


>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
 Frame = -3

Query: 339 SIRHATLFETLPTDTMLFTRDLWTIKPTHLGT-----SALPLGKRTSGRTARLSYPLPVF 175
           SI    +F  L  DT+ F  +L + K T +GT     +   LG   S     L YP P  
Sbjct: 256 SINDCDIFIGLKRDTIEF--NLASNKNTTIGTISWLLNLFVLGSWKSPLLNALHYPFPSV 313

Query: 174 GFLINQ 157
           GFL +Q
Sbjct: 314 GFLKDQ 319


>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 76  HTTCAL*GWTRSLSSWKKRWTSCAGTSLVYQKSED 180
           H +  L  WT   S +K RW +     L Y K++D
Sbjct: 256 HMSGYLKKWTNYKSGYKLRWFTLNNGVLSYYKNQD 290


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -2

Query: 577 PTSVLWSSAAHIQTDPLSTHHCFTTQLCIKVSHNNSKMCFGAMYGPT 437
           PT+   S   +  T   S + C  T LC  V+  + + C GA Y P+
Sbjct: 783 PTTTSISGTCNGATFDASLYVCDGTVLCPIVNGVSYQNCNGACYNPS 829


>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 604

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -3

Query: 216 SGRTARLSYPLPVFGFLINQ*RPSATCPSLLPTRQ 112
           SG+T  LSY +P+   L ++  P   C  ++PTR+
Sbjct: 184 SGKT--LSYVIPIVQCLSHRTVPRLRCVVIVPTRE 216


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +3

Query: 102  DEKLVELEEEMDKLRWDVIGL 164
            +EKL   +EE+++L+ D+IGL
Sbjct: 946  NEKLNARDEEIERLKVDIIGL 966


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,985,212
Number of Sequences: 5004
Number of extensions: 66159
Number of successful extensions: 198
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)