Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0784
         (659 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0224 - 5984128-5984923,5985667-5986718,5986800-5987776,598...    30   1.9  
04_04_0139 - 23068868-23069280,23069729-23069831,23070221-23070562     30   1.9  
11_04_0289 - 15804766-15804977,15805742-15805862,15806541-158067...    29   3.3  
07_03_1554 + 27659995-27660093,27661084-27661120,27661204-276612...    29   3.3  
08_01_0190 - 1583044-1583802                                           28   5.7  
09_02_0546 - 10454404-10455687                                         28   7.6  
05_07_0093 - 27648656-27648736,27649034-27649147,27649229-276492...    28   7.6  

>09_02_0224 -
           5984128-5984923,5985667-5986718,5986800-5987776,
           5988427-5989228,5990966-5991016,5992391-5993464,
           5994458-5994706
          Length = 1666

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
 Frame = -2

Query: 601 SFFLQKVGPTSVLWSSAAHIQTDPLSTHHCFTTQLCIKVSHNNSKMCFGAMYGPTDVLI- 425
           S F   VG  S L S+  H+Q+    +    T    IK+  +NS     ++  PT+ +I 
Sbjct: 651 SKFSPGVGLNSYLPSNLRHVQSTNAFSSSTVTKSSSIKLPSSNSNHELSSLSSPTEHVIA 710

Query: 424 ---QSFYLIVWVCLSGSVNL 374
              +S  L+    ++GS+NL
Sbjct: 711 DGSKSLQLVPASKINGSINL 730


>04_04_0139 - 23068868-23069280,23069729-23069831,23070221-23070562
          Length = 285

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -3

Query: 216 SGRTARLSYPLPVFGFLINQ*RPSATCPSLLPTRQASRPASECARC 79
           + RT  L++PLP+         P    P  LP R A+RP +  A+C
Sbjct: 4   AARTLALAFPLPLCAVS----SPRRATPLALPRRGAARPLASLAQC 45


>11_04_0289 -
           15804766-15804977,15805742-15805862,15806541-15806776,
           15807639-15807766,15807873-15807910,15808041-15808129,
           15808669-15808774,15811395-15811580
          Length = 371

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 86  AHSEAGREACRVGRRDGQV-ALGRHWFIRNPKTGRGYDNLAV 208
           A +  GR+A  VGRR+G V A GR  +    K G+  D  AV
Sbjct: 22  AVAAGGRDAAAVGRREGDVAATGRREWDAAAKVGKEGDAAAV 63


>07_03_1554 +
           27659995-27660093,27661084-27661120,27661204-27661280,
           27662272-27662342,27662512-27662590,27662726-27662828,
           27662963-27663082,27663180-27663257,27663416-27663471,
           27663588-27663657,27664179-27664266,27664503-27664800,
           27664943-27665158,27665521-27665841,27666054-27666103,
           27666493-27666553,27666633-27666716,27666926-27667039,
           27667134-27667300,27667559-27667628,27668328-27668507,
           27668619-27668807
          Length = 875

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +1

Query: 118 SWKKRWTSCAGTSLVYQKSE 177
           SWKKRW     TSLV+ KS+
Sbjct: 51  SWKKRWFILTRTSLVFFKSD 70


>08_01_0190 - 1583044-1583802
          Length = 252

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +1

Query: 64  WPW*HTTCAL*GWTR-SLSSWKKRWTSCAGTSLVYQKSEDRERIR*P 201
           WP   +  +  G  R S+  W+  W  CAG + V Q    R  +R P
Sbjct: 9   WPLSPSPSSTRGRRRVSVKPWRLWWRRCAGVAAVIQSKIHRRAVRWP 55


>09_02_0546 - 10454404-10455687
          Length = 427

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = +1

Query: 136 TSCAGTSLVYQKSEDRERIR*PCSPATCSFTERESRSPKVCWF 264
           +SCA T +  +  ED    R P S  TC F E     PK C F
Sbjct: 214 SSCASTCVHCE--EDHPPDRCPTSRITCFFCEGTDHVPKDCQF 254


>05_07_0093 - 27648656-27648736,27649034-27649147,27649229-27649288,
            27649464-27649687,27649799-27649886,27650326-27650532,
            27650566-27650784,27650903-27651001,27651439-27651504,
            27651654-27651737,27651829-27651888,27652041-27652325,
            27652789-27652836,27652988-27653034,27653442-27653556,
            27653958-27654032,27654227-27654298,27654944-27656124,
            27656613-27656757
          Length = 1089

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +3

Query: 105  EKLVELEEEMDKLRWDVIGLSEIRRQGEDTITLQ 206
            E + E +EE+++LR D++ L E+ R+  D +  Q
Sbjct: 1055 ELMGERDEELEELRNDIVDLKEMYREQVDLLVSQ 1088


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,689,654
Number of Sequences: 37544
Number of extensions: 442058
Number of successful extensions: 1250
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1250
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)