Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0784
         (659 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    60   1e-09
AF016663-5|AAC70880.1|  864|Caenorhabditis elegans Hypothetical ...    58   6e-09
U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    53   2e-07
Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical pr...    29   3.9  
AF039049-12|AAB94245.1|  499|Caenorhabditis elegans Cytochrome p...    29   3.9  
U41550-1|AAA83284.1| 1057|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
           transcriptase protein.
          Length = 1066

 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 29/93 (31%), Positives = 47/93 (50%)
 Frame = +2

Query: 230 RGRAEVPRCVGFIVHKSLXXXXXXXXXXXXXXACLILRISKRYSLKVIQVYAPTQTHPDD 409
           R  + V   VGFIV  +L                L  ++S++++  VIQVYAPT     +
Sbjct: 172 RNESSVSGGVGFIVRSTLLPKIVEVRFLSHRIGLLTFKVSRKFNCTVIQVYAPTADSDLE 231

Query: 410 EVEALYEDVSRAIHSSKTHFTVVMGDFNAKLGC 508
           E+   Y+ V       ++ + +V+GDFNA++GC
Sbjct: 232 EICDFYDSVEDVFRECRSKYKLVIGDFNARMGC 264


>AF016663-5|AAC70880.1|  864|Caenorhabditis elegans Hypothetical
           protein F21E9.5 protein.
          Length = 864

 Score = 58.0 bits (134), Expect = 6e-09
 Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 1/124 (0%)
 Frame = +2

Query: 257 VGFIVHKSLXXXXXXXXXXXXXXACLILRISKRYSLKVIQVYAPTQTHPDDEVEALYEDV 436
           VGFIV  +L                +  ++++++   VIQVYAPT     DE+   YE +
Sbjct: 25  VGFIVKSTLLPRITEVVFIDYRIGLITFKVNRKWKCTVIQVYAPTAVSTLDEISDFYEKL 84

Query: 437 SRAIHSSKTHFTVVMGDFNAKLGCEAMMS*KWVSLD-MGSGTPEDRGWADFLEKEGLYMM 613
               H+ ++ + +++GDFNA++G     + +++    M          A F E   L+ +
Sbjct: 85  EDTYHACRSKYKLIIGDFNARVGNRKDETERYIGTHAMEPRNDTGEILATFCESNRLWHI 144

Query: 614 NSFF 625
           NS F
Sbjct: 145 NSQF 148


>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 28/97 (28%), Positives = 47/97 (48%)
 Frame = +2

Query: 218 VLLPRGRAEVPRCVGFIVHKSLXXXXXXXXXXXXXXACLILRISKRYSLKVIQVYAPTQT 397
           VL P G A       ++V  +L                L  ++S++++  VIQVYAPT  
Sbjct: 3   VLYPEGSAS------YVVRSTLLPKIVEVRFLSHRIGLLTFKVSRKFNCTVIQVYAPTAD 56

Query: 398 HPDDEVEALYEDVSRAIHSSKTHFTVVMGDFNAKLGC 508
              +E+   Y+ V       ++ + +V+GDFNA++GC
Sbjct: 57  LDLEEICDFYDSVEDVFRECRSKYKLVIGDFNARMGC 93


>Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical protein
            F07A11.4 protein.
          Length = 1095

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = +3

Query: 108  KLVELEEEMDKLRWDVIGLSEIRRQGEDTITLQSGHLFFYREGEQ 242
            +L + +    K+ W     S + RQ   T+  +  +L FY+  +Q
Sbjct: 1028 RLADFDSSKTKIEWRNFDDSTVARQSTSTLQTEDAYLLFYKMRDQ 1072


>AF039049-12|AAB94245.1|  499|Caenorhabditis elegans Cytochrome p450
           family protein 35B3 protein.
          Length = 499

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +2

Query: 347 SKRYSLKVIQVYAPTQTHPDDEVEALYEDVSRAIHS-SKTHFTV 475
           SKRY    +  Y P+   P D VEA    + +   +   THFT+
Sbjct: 252 SKRYDKMKLGEYTPSSEDPQDFVEAFLAKIDQEEQTGGPTHFTM 295


>U41550-1|AAA83284.1| 1057|Caenorhabditis elegans Hypothetical
           protein R04A9.2 protein.
          Length = 1057

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 116 RVGRRDGQVALGRHWFIRNPKTGRGYDNLAV 208
           R  RR  Q  L R WF RNP+  +G  + A+
Sbjct: 149 RQQRRQAQCLLFRAWFKRNPELFKGMTDPAI 179


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,478,501
Number of Sequences: 27780
Number of extensions: 365299
Number of successful extensions: 980
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)