Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0784
         (659 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    25   0.85 
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    25   0.85 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    24   1.5  

>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 387 PLRHTQTMR*KLCMRTSVGPYI 452
           PL ++  M  +LC++  VGPY+
Sbjct: 9   PLLYSVAMSQRLCIQLVVGPYV 30


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 387 PLRHTQTMR*KLCMRTSVGPYI 452
           PL ++  M  +LC++  VGPY+
Sbjct: 8   PLLYSVAMSQRLCIQLVVGPYV 29


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 5/50 (10%)
 Frame = +3

Query: 63  LALVTHNVRTLRLDEKLVELEEEM---DKLRWDVI--GLSEIRRQGEDTI 197
           LAL    +++ +L+E + +L+EEM   D+L + +I   +++  R GE+ I
Sbjct: 365 LALDQEQLKSKKLEESMRKLDEEMKRTDELLYQMIPKQVADRLRNGENPI 414


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,535
Number of Sequences: 438
Number of extensions: 4854
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)