Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0784
(659 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g19390.2 68418.m02311 pleckstrin homology (PH) domain-contain... 30 1.6
At5g19390.1 68418.m02310 pleckstrin homology (PH) domain-contain... 30 1.6
At5g12150.1 68418.m01426 pleckstrin homology (PH) domain-contain... 30 1.6
At4g24580.1 68417.m03522 pleckstrin homology (PH) domain-contain... 30 1.6
At2g13680.1 68415.m01508 glycosyl transferase family 48 protein ... 30 1.6
At1g15190.1 68414.m01816 hypothetical protein 30 1.6
At5g42840.1 68418.m05221 DC1 domain-containing protein contains ... 29 2.1
At4g11410.1 68417.m01839 short-chain dehydrogenase/reductase (SD... 29 3.6
At5g40450.1 68418.m04905 expressed protein 28 4.8
At5g41315.1 68418.m05021 basic helix-loop-helix (bHLH) family pr... 28 6.3
At1g50090.1 68414.m05619 aminotransferase class IV family protei... 28 6.3
At3g62270.1 68416.m06996 anion exchange family protein contains ... 27 8.4
At1g67930.1 68414.m07757 Golgi transport complex protein-related... 27 8.4
>At5g19390.2 68418.m02311 pleckstrin homology (PH) domain-containing
protein / RhoGAP domain-containing protein weak
similarity to rho-GTPase activating protein [Homo
sapiens] GI:14245732; contains Pfam profiles PF00169: PH
domain, PF00620: RhoGAP domain
Length = 870
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +1
Query: 97 GWTRSLSSWKKRWTSCAGTSLVYQKSE 177
GWT SWKKRW TSLV+ K++
Sbjct: 33 GWT----SWKKRWFILTRTSLVFFKND 55
>At5g19390.1 68418.m02310 pleckstrin homology (PH) domain-containing
protein / RhoGAP domain-containing protein weak
similarity to rho-GTPase activating protein [Homo
sapiens] GI:14245732; contains Pfam profiles PF00169: PH
domain, PF00620: RhoGAP domain
Length = 822
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +1
Query: 97 GWTRSLSSWKKRWTSCAGTSLVYQKSE 177
GWT SWKKRW TSLV+ K++
Sbjct: 33 GWT----SWKKRWFILTRTSLVFFKND 55
>At5g12150.1 68418.m01426 pleckstrin homology (PH) domain-containing
protein / RhoGAP domain-containing protein weak
similarity to glucocorticoid receptor DNA binding factor
1 [Canis familiaris] GI:23266717; contains Pfam profiles
PF00169: PH domain, PF00620: RhoGAP domain
Length = 827
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +1
Query: 97 GWTRSLSSWKKRWTSCAGTSLVYQKSE 177
GWT SWKKRW TSLV+ K++
Sbjct: 33 GWT----SWKKRWFILTRTSLVFFKND 55
>At4g24580.1 68417.m03522 pleckstrin homology (PH) domain-containing
protein-related / RhoGAP domain-containing protein
contains Pfam domain, PF00620: RhoGAP domain
Length = 902
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +1
Query: 97 GWTRSLSSWKKRWTSCAGTSLVYQKSE 177
GWT SWKKRW TSLV+ +S+
Sbjct: 75 GWT----SWKKRWFILTRTSLVFFRSD 97
>At2g13680.1 68415.m01508 glycosyl transferase family 48 protein
contains Pfam profile: PF02364 1,3-beta-glucan synthase
Length = 1923
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +2
Query: 527 KWVSLDMGSGTPEDRGWADFLEKEGLYMMNSFF 625
KW+S G G P ++ W + E+E ++++S F
Sbjct: 1697 KWISSRGGIGVPANKSWESWWEEEQEHLLHSGF 1729
>At1g15190.1 68414.m01816 hypothetical protein
Length = 248
Score = 29.9 bits (64), Expect = 1.6
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Frame = -3
Query: 351 FDILSIRHATLFETLPTDTMLFTRDLWTIKPTHLGT---SALPLGKRTSG-RTARLSYPL 184
FD+LS TLF PTD+MLF D+ P ++ T ++PL SG R+ S L
Sbjct: 61 FDLLSDESLTLFA--PTDSMLFDLDMTHSLPFYVSTLRLHSVPLRLSLSGLRSLPNSSSL 118
Query: 183 P 181
P
Sbjct: 119 P 119
>At5g42840.1 68418.m05221 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 671
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = -2
Query: 331 ARYPIRDAPDGHNVVHERLVDDKTNTPWDFCSPSR*KNKWPDCKVIVSSPCLRISDKP 158
AR P++ H ++ VD N P DFC+ S P C+ ++ C + D P
Sbjct: 114 ARSPLKLPWHDHPLIK---VDLGANMPCDFCNESGIDYCCPRCRFMIHERCASVFDSP 168
>At4g11410.1 68417.m01839 short-chain dehydrogenase/reductase (SDR)
family protein contains INTERPRO family IPR002198
Short-chain dehydrogenase/reductase (SDR) superfamily
Length = 317
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +3
Query: 165 SEIRRQGEDTITLQSGHLFFYREGEQ 242
SE R+G I GH F YREG Q
Sbjct: 157 SESNREGRIVIVSSEGHRFAYREGVQ 182
>At5g40450.1 68418.m04905 expressed protein
Length = 2910
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/52 (23%), Positives = 32/52 (61%)
Frame = +3
Query: 90 TLRLDEKLVELEEEMDKLRWDVIGLSEIRRQGEDTITLQSGHLFFYREGEQK 245
T++ ++++V+++++ I SE+++ +D L+ G+ F R+GE++
Sbjct: 2390 TVKEEDQIVDIKDKKKDDEEQEIVSSEVKKDNKDARELEVGNDFVSRDGEKE 2441
>At5g41315.1 68418.m05021 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain ;annotation temporarily based on
supporting cDNA gi|17224394|gb|AF246291.1|AF246291
Length = 637
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 532 GQFGYGQRNSRGQRLGRLSGERRTL 606
G+ YG R SR QRLG++ ++R +
Sbjct: 321 GRVAYGARKSRVQRLGQIQEQQRNV 345
>At1g50090.1 68414.m05619 aminotransferase class IV family protein
contains Pfam profile: PF01063 aminotransferase class IV
Length = 367
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -2
Query: 544 IQTDPLSTHHCFTTQLCIKVSHNNSKMCFGAMYG 443
I T P+ +H ++ L +KV HN+ + FG G
Sbjct: 167 IYTSPVGNYHKASSGLNLKVDHNHRRAHFGGTGG 200
>At3g62270.1 68416.m06996 anion exchange family protein contains
similarity to anion exchanger 3, cardiac splice form -
Rattus norvegicus, PIR:A42497
Length = 703
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -3
Query: 354 RFDILSIRHATLFETLPTDTM-LFTRDLWTIKPTHLGTSALPL 229
RF +L HAT ET+P T+ +FT T T G + +P+
Sbjct: 523 RFKVLEDNHATFVETVPFKTIAMFTIFQTTYLLTCFGLTWIPI 565
>At1g67930.1 68414.m07757 Golgi transport complex protein-related
similar to golgi transport complex protein (GTC90)
GB:5453670 [Homo sapiens] (stimulates in vitro Golgi
transport J. Biol. Chem. 273 (45), 29565-29576 (1998))
Length = 832
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = +3
Query: 69 LVTHNVRTLRLDEKLVELEEEMDKLRWDV 155
L++H+VRTLRL +KL +L + D + D+
Sbjct: 166 LLSHSVRTLRLSKKLRDLADFPDPDKIDL 194
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,720,255
Number of Sequences: 28952
Number of extensions: 349610
Number of successful extensions: 981
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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