Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0783
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    28   1.4  
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c...    27   1.8  
SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces ...    27   1.8  
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    27   2.4  
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    27   2.4  
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces...    27   2.4  
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    27   2.4  
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    27   2.4  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    26   4.2  
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    26   4.2  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    26   5.6  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    25   7.4  
SPBC577.04 |||human THOC5 homolog|Schizosaccharomyces pombe|chr ...    25   7.4  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   7.4  
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ...    25   9.7  
SPAC644.08 |||haloacid dehalogenase-like hydrolase|Schizosacchar...    25   9.7  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    25   9.7  

>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
 Frame = +2

Query: 53  LKAEHLIIKGFPEKIVKLNELLETS-NFQNRNLSDVHQDLNIPIPTPPATSNNEPNAKRQ 229
           +K E  + +  P++  +  E ++TS +    N+S + +  ++P+PT  AT+   P +   
Sbjct: 524 IKEEEAVSENAPQQEERSFEQIKTSIHIAPENISAIEESKSVPLPTSFATT--IPGSTSA 581

Query: 230 RLDSSELSTTQP*KE 274
            LD  + +T  P +E
Sbjct: 582 ALDDQQ-TTEAPFEE 595


>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 547

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 134 QNRNLSDVHQDLNIPIPTPPATSNNEPNAKRQRLDSS 244
           Q+ ++S  H  L+IP+P P   SNN  N    ++ SS
Sbjct: 61  QDSSISFTHDPLHIPLPNP---SNNNDNIFHPQVHSS 94


>SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 305

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 200 SNNEPNAKRQRLDSSELSTTQP*KEHGFMYCRMVQY 307
           +N EP  K   LDSS++S      E  + YC+ V Y
Sbjct: 226 TNGEPLVKHDTLDSSDISRE---GEQLYCYCQQVSY 258


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -3

Query: 62  PPLVSKNLCSLGPFLQRLS 6
           PPL+ + LCSL P ++RL+
Sbjct: 515 PPLLCERLCSLNPNVERLA 533


>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 649 CDFAHTDRVTNILFHP 602
           C F H+D VT+I FHP
Sbjct: 344 CCFEHSDFVTSIAFHP 359


>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 796

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -1

Query: 640 AHTDRVTNILFHPI-PTALXSHQCGGIG 560
           +HT+RV  + FHP  P  + SH  G +G
Sbjct: 12  SHTERVKAVDFHPTEPWVIASHYNGQVG 39


>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 629

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 16/66 (24%), Positives = 28/66 (42%)
 Frame = +1

Query: 421 EDGNNFGVSIQEDTLAEIQSVGSEAAAFFVKSHDISYPGAKIVSQVAQYPHIDDYXEL*G 600
           ++GN     I E+ ++ I ++G      +    D+S+P    +  +  Y   DD     G
Sbjct: 525 QNGNVGPRQISEEPMSIIFNLGISNNWAYYYFRDLSFPAVMYIDYIRIYQDPDDTNSHIG 584

Query: 601 LDEKGY 618
            D  GY
Sbjct: 585 CDPPGY 590


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 191 PATSNNEPNAKRQRLDSSELS 253
           P  S+N PN KR+R  SSE S
Sbjct: 490 PTRSDNPPNEKRRRTSSSENS 510


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
 Frame = +1

Query: 313  NKPLSDL----IHLVKPHIRELVEDSNLLKMW 396
            N+ L DL    IHLVKP++    E  N LK W
Sbjct: 1072 NQELLDLLLFSIHLVKPNVETNDEVCNTLKAW 1103


>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 286 VLPNGSVPCNKPLSDLIHLVKPH 354
           VLPNG+      ++D+ H VKP+
Sbjct: 523 VLPNGNYEVGVHIADVTHFVKPN 545


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 491 SDPTDCISASVSSCMETPKLFPSSI 417
           SDPT  I++ VSS + +P    SS+
Sbjct: 707 SDPTTTITSEVSSILSSPTSMQSSV 731


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = +2

Query: 23  KVQDYKDSLKLKAEHLI--IKGFPEKIVKLNELLETSNFQNRNLSDVHQDLNIPIPTPPA 196
           ++Q     LKL+ E L   IK   E+   L E LET     +NL +++ +    +     
Sbjct: 319 EIQTQNRDLKLETEKLQDQIKALLERNQSLQEALETVKNDEKNLREMNANYETEMKEARQ 378

Query: 197 TSNNE 211
             NN+
Sbjct: 379 KLNNK 383


>SPBC577.04 |||human THOC5 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 200

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +3

Query: 177 QYQHHLRRQTMSQMLNVKDWTHRSYPQLNHRRNTGLCTAEWFSTLQQA 320
           Q    ++RQ MS++L +++   +SY QL   +     TAE  S L  A
Sbjct: 36  QNPEQIKRQLMSKLLILREANRKSYEQLVQAKT---ITAEHKSELDNA 80


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = -3

Query: 467 ASVSSCMETPKLFPSSIFGIINEIHILSKFESSTSSLMCGLTRCIRSLSGLLQGTEPFGS 288
           +SVSS + +    PSS    I+     S F S+++S    ++  I S S +L    P  S
Sbjct: 574 SSVSSILSSSTSSPSSTSLSISSSSTSSTFSSASTSSPSSISSSISSSSTILSSPTPSTS 633

Query: 287 T 285
           +
Sbjct: 634 S 634


>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 89  EKIVKLNELLETSNFQNRNLSDVHQDLNIPIPTPPATSN 205
           E+++K  EL   ++    N S+++Q  N+P      TSN
Sbjct: 408 EELIKKEELEADTDLGLINTSEINQPANLPDEPTAETSN 446


>SPAC644.08 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 238 LIGVIHNSTIEGTRVYVLPNGSVPCNK 318
           ++  I  S   G RVY+  +GSVP  K
Sbjct: 97  VVPAIQRSLQLGMRVYIYSSGSVPAQK 123


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/59 (20%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +2

Query: 86  PEKIVKLNELLE-TSNFQNRNLSDVHQDLNIPIPTPPATSNNEPNAKRQRLDSSELSTT 259
           P  +V+ N  ++ T+   + + +D+H +    +  PP++   E N    +L++ ++S++
Sbjct: 390 PSFVVQNNSAVQPTTQKTSEDSTDLHTNEIPNVAQPPSSFEKENNKDTSKLENPDISSS 448


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,823,354
Number of Sequences: 5004
Number of extensions: 59666
Number of successful extensions: 201
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)