Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0783
         (664 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12612| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.63 
SB_38572| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0034)               29   2.6  
SB_2792| Best HMM Match : Sod_Fe_N (HMM E-Value=3.5)                   28   5.9  
SB_48090| Best HMM Match : Phage_P2_GpE (HMM E-Value=9.6)              28   5.9  
SB_37663| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  

>SB_12612| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 231

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 9/73 (12%)
 Frame = +2

Query: 56  KAEHLIIKGFPEKIVKLNELLETSNFQNRNLSDVHQDLNIPIPTPPATSNN--------- 208
           KAE ++ K FPE++ +L+ LL++  F    +  V  D  IPI  P +  +N         
Sbjct: 5   KAEEVVTKFFPERVTELDNLLKSGMFALNKIPKVQADSIIPISHPNSDHSNDILLKKSFL 64

Query: 209 EPNAKRQRLDSSE 247
           +P  K+++L +SE
Sbjct: 65  QPQNKKRKLSNSE 77


>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3760

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
 Frame = +2

Query: 74   IKGFPEKIVKLNELLETSNFQNRNLSDVHQDLNIPIP---TPPATSNNEPNAKRQRL 235
            I+   EK+ K NE +E    +N  LSD+  +LN  I         S+++PN K Q+L
Sbjct: 1947 IEEMREKMRKANEEIEKILSKNSKLSDILNELNSGIENILNEETLSDSDPNVKLQKL 2003


>SB_38572| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0034)
          Length = 671

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +2

Query: 533 QGLK*YPKLPNTPTLMTTESCRDWMKKDICHSVGMC 640
           Q L+  P  P+TPT  T E    W+K   C S  +C
Sbjct: 476 QWLRNSPSKPDTPTDRTLEVTGQWLKASPCTSDPLC 511


>SB_2792| Best HMM Match : Sod_Fe_N (HMM E-Value=3.5)
          Length = 290

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 24/68 (35%), Positives = 35/68 (51%)
 Frame = +1

Query: 244 GVIHNSTIEGTRVYVLPNGSVPCNKPLSDLIHLVKPHIRELVEDSNLLKMWISFMIPKIE 423
           G + ++T EG  V VL   + PC   LSD+I +    + EL   SN +  WI     +I 
Sbjct: 88  GTVCDAT-EGLCV-VLKRFAYPCR--LSDMISIFGRSVPELSMISNEVTEWIYAHHHRIT 143

Query: 424 DGNNFGVS 447
           + NNF +S
Sbjct: 144 EWNNFILS 151


>SB_48090| Best HMM Match : Phage_P2_GpE (HMM E-Value=9.6)
          Length = 176

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 24/68 (35%), Positives = 35/68 (51%)
 Frame = +1

Query: 244 GVIHNSTIEGTRVYVLPNGSVPCNKPLSDLIHLVKPHIRELVEDSNLLKMWISFMIPKIE 423
           G + ++T EG  V VL   + PC   LSD+I +    + EL   SN +  WI     +I 
Sbjct: 88  GTVCDAT-EGLCV-VLKRFAYPCR--LSDMISIFGRSVPELSMISNEVTEWIYAHHHRIT 143

Query: 424 DGNNFGVS 447
           + NNF +S
Sbjct: 144 EWNNFILS 151


>SB_37663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1735

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +2

Query: 128  NFQNRNLSDVHQDLNIPIPTPPATSNNEPNAKRQRLDSSELST 256
            ++ N++  D H  L+ P PTPP      P  K+ ++    L T
Sbjct: 1384 HYTNKDPVDKHNPLHNPSPTPPTALLISPLTKQAQMTRGFLET 1426


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,520,081
Number of Sequences: 59808
Number of extensions: 417393
Number of successful extensions: 1203
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1201
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)