Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0783
(664 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL161712-6|CAC70141.1| 248|Caenorhabditis elegans Hypothetical ... 124 6e-29
U42846-1|AAA83600.2| 872|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z74033-2|CAA98476.2| 419|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z74033-1|CAA98475.2| 460|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z77133-7|CAB00865.2| 735|Caenorhabditis elegans Hypothetical pr... 29 3.9
U50193-7|AAL11479.1| 327|Caenorhabditis elegans T box family pr... 29 3.9
U28409-2|AAN60501.1| 288|Caenorhabditis elegans Hypothetical pr... 29 3.9
AL008868-4|CAO82021.1| 735|Caenorhabditis elegans Hypothetical ... 29 3.9
Z81449-11|CAD44106.2| 410|Caenorhabditis elegans Hypothetical p... 28 5.1
Z81449-10|CAB03766.4| 419|Caenorhabditis elegans Hypothetical p... 28 5.1
Z48241-6|CAD44100.2| 410|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z48241-5|CAA88286.4| 419|Caenorhabditis elegans Hypothetical pr... 28 5.1
U29244-10|AAC71091.2| 908|Caenorhabditis elegans Hypothetical p... 28 5.1
AC084158-1|AAK68563.2| 1256|Caenorhabditis elegans Hypothetical ... 28 5.1
AC006619-3|AAK68253.1| 943|Caenorhabditis elegans Hypothetical ... 28 5.1
U58742-3|AAB36855.1| 262|Caenorhabditis elegans Helix loop heli... 28 6.8
AC024806-3|AAP13749.1| 363|Caenorhabditis elegans Serpentine re... 28 6.8
U43375-3|AAA83620.1| 110|Caenorhabditis elegans Hypothetical pr... 27 9.0
U41011-7|AAA82290.1| 271|Caenorhabditis elegans Hypothetical pr... 27 9.0
U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activati... 27 9.0
L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical pr... 27 9.0
>AL161712-6|CAC70141.1| 248|Caenorhabditis elegans Hypothetical
protein Y66D12A.9 protein.
Length = 248
Score = 124 bits (299), Expect = 6e-29
Identities = 53/121 (43%), Positives = 88/121 (72%), Gaps = 1/121 (0%)
Frame = +1
Query: 268 EGTRVYVLPNGSVPCNKPLSDLIHLVKPHIRELVEDSNLLKMWISFMIPKIEDGNNFGVS 447
+G ++ +G+VPCN+ L+ L+ LV+P +R+ VE N +KMWI+ +IP+IEDGNNFGV
Sbjct: 91 KGAPIFAFSSGTVPCNENLAQLMDLVRPKLRDAVEQCNNVKMWITLLIPRIEDGNNFGVG 150
Query: 448 IQEDTLAEIQSVGSEAAAFFVKSHDISYPGAKIVSQVAQYPHIDDYXE-L*GLDEKGYLS 624
IQE+TL+E+++V SEAA+F + K+++++A+YPH+DDY + +DEK +++
Sbjct: 151 IQEETLSEVRNVESEAASFLDQMSRYFTTRGKLITKIAKYPHVDDYRRAILDMDEKQFIN 210
Query: 625 L 627
+
Sbjct: 211 I 211
Score = 52.8 bits (121), Expect = 2e-07
Identities = 28/77 (36%), Positives = 47/77 (61%), Gaps = 4/77 (5%)
Frame = +2
Query: 20 KKVQDYKDSLKLKAEHLIIKGFPEKIVKLNELLETSNFQNRNLSDVHQD--LNIPIPTP- 190
K++ +YK L +AE L+ + FP+K+++ + LL++ L+++ D LNIPIP
Sbjct: 11 KELVEYKQKLFAEAERLVKEEFPKKVIEFDALLKSPKLSYDRLAEILPDKSLNIPIPDAL 70
Query: 191 -PATSNNEPNAKRQRLD 238
T ++EP KRQR+D
Sbjct: 71 NGTTDSDEPAVKRQRVD 87
>U42846-1|AAA83600.2| 872|Caenorhabditis elegans Hypothetical
protein T19D2.1 protein.
Length = 872
Score = 29.9 bits (64), Expect = 1.7
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Frame = -3
Query: 554 WD-TILAPGYEIS*DLTKKAAASDPTDCISASVSSCMETPKLFPSSIFGIINEI-HILSK 381
WD +L GY++ + K A P + + V SC L S+F + +E+ H L
Sbjct: 237 WDHALLFSGYDLHRNGVKTVAGYAPVKGMCSGVRSCTINEGLDFGSVFVVTHEMGHSLGM 296
Query: 380 FESSTSSLMCGLTRCIRSLS 321
+ + C L CI S S
Sbjct: 297 YHDGDNE--CDLRCCIMSPS 314
>Z74033-2|CAA98476.2| 419|Caenorhabditis elegans Hypothetical
protein F38B7.1b protein.
Length = 419
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +2
Query: 560 PNTPTLMTTESCRDWMKKDICHSVGMCEIA 649
P P L TE CR WM C+ C+ A
Sbjct: 152 PKNPKLYKTELCRSWMDHGRCNYGERCQYA 181
>Z74033-1|CAA98475.2| 460|Caenorhabditis elegans Hypothetical
protein F38B7.1a protein.
Length = 460
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +2
Query: 560 PNTPTLMTTESCRDWMKKDICHSVGMCEIA 649
P P L TE CR WM C+ C+ A
Sbjct: 193 PKNPKLYKTELCRSWMDHGRCNYGERCQYA 222
>Z77133-7|CAB00865.2| 735|Caenorhabditis elegans Hypothetical
protein K03A11.1 protein.
Length = 735
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 134 QNRNLSDVHQDLNIPIPTPPATSNNEPN 217
QN N+S+VH ++I PT NN N
Sbjct: 124 QNMNISNVHNGVHISTPTENLAENNANN 151
>U50193-7|AAL11479.1| 327|Caenorhabditis elegans T box family
protein 7 protein.
Length = 327
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 140 RNLSDVHQ-DLNIPIPTPPATSNNEPNAKRQRLDSSELSTTQP 265
RN+ V + +N I TPPA+ + EP KR + + + + P
Sbjct: 237 RNIDTVRKRKMNQIISTPPASEDEEPEVKRTKSEIEAVMFSDP 279
>U28409-2|AAN60501.1| 288|Caenorhabditis elegans Hypothetical
protein T25D10.5 protein.
Length = 288
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -2
Query: 249 NSDESSL*RLAFGSLFDV-AGGVGIGMFKS*CTSDKFRF 136
NSD+ S+ + G D GG+ + +F S TS+K+RF
Sbjct: 9 NSDKYSI-KSVLGKFCDTNCGGINVSLFVSETTSNKYRF 46
>AL008868-4|CAO82021.1| 735|Caenorhabditis elegans Hypothetical
protein K03A11.1 protein.
Length = 735
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 134 QNRNLSDVHQDLNIPIPTPPATSNNEPN 217
QN N+S+VH ++I PT NN N
Sbjct: 124 QNMNISNVHNGVHISTPTENLAENNANN 151
>Z81449-11|CAD44106.2| 410|Caenorhabditis elegans Hypothetical
protein C32A3.3b protein.
Length = 410
Score = 28.3 bits (60), Expect = 5.1
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Frame = +2
Query: 20 KKVQDYKDSLKLKAE-HLIIKGFPEKIVKLNELLETSNFQNRNLSDVHQDLNIPIPTPPA 196
+K Q + LK + E + K + + I L +++++ +NRNLS L +P +
Sbjct: 75 EKHQRNQQHLKFEEELEQVEKTYRKDIDDLQQMVKSLVNENRNLSTTVSSLPNHADSPVS 134
Query: 197 TSNNEPNAKRQRLDSSELSTTQ 262
TS E + K L+ E+S+ Q
Sbjct: 135 TSMREADLK-MLLELKEMSSQQ 155
>Z81449-10|CAB03766.4| 419|Caenorhabditis elegans Hypothetical
protein C32A3.3a protein.
Length = 419
Score = 28.3 bits (60), Expect = 5.1
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Frame = +2
Query: 20 KKVQDYKDSLKLKAE-HLIIKGFPEKIVKLNELLETSNFQNRNLSDVHQDLNIPIPTPPA 196
+K Q + LK + E + K + + I L +++++ +NRNLS L +P +
Sbjct: 84 EKHQRNQQHLKFEEELEQVEKTYRKDIDDLQQMVKSLVNENRNLSTTVSSLPNHADSPVS 143
Query: 197 TSNNEPNAKRQRLDSSELSTTQ 262
TS E + K L+ E+S+ Q
Sbjct: 144 TSMREADLK-MLLELKEMSSQQ 164
>Z48241-6|CAD44100.2| 410|Caenorhabditis elegans Hypothetical
protein C32A3.3b protein.
Length = 410
Score = 28.3 bits (60), Expect = 5.1
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Frame = +2
Query: 20 KKVQDYKDSLKLKAE-HLIIKGFPEKIVKLNELLETSNFQNRNLSDVHQDLNIPIPTPPA 196
+K Q + LK + E + K + + I L +++++ +NRNLS L +P +
Sbjct: 75 EKHQRNQQHLKFEEELEQVEKTYRKDIDDLQQMVKSLVNENRNLSTTVSSLPNHADSPVS 134
Query: 197 TSNNEPNAKRQRLDSSELSTTQ 262
TS E + K L+ E+S+ Q
Sbjct: 135 TSMREADLK-MLLELKEMSSQQ 155
>Z48241-5|CAA88286.4| 419|Caenorhabditis elegans Hypothetical
protein C32A3.3a protein.
Length = 419
Score = 28.3 bits (60), Expect = 5.1
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Frame = +2
Query: 20 KKVQDYKDSLKLKAE-HLIIKGFPEKIVKLNELLETSNFQNRNLSDVHQDLNIPIPTPPA 196
+K Q + LK + E + K + + I L +++++ +NRNLS L +P +
Sbjct: 84 EKHQRNQQHLKFEEELEQVEKTYRKDIDDLQQMVKSLVNENRNLSTTVSSLPNHADSPVS 143
Query: 197 TSNNEPNAKRQRLDSSELSTTQ 262
TS E + K L+ E+S+ Q
Sbjct: 144 TSMREADLK-MLLELKEMSSQQ 164
>U29244-10|AAC71091.2| 908|Caenorhabditis elegans Hypothetical
protein ZK1248.10 protein.
Length = 908
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +2
Query: 101 KLNELLETSNFQNRNLSDVHQDLNIPIPTPPATSNNEPNAKRQRLDSSE 247
K + L+ S+ RN S V ++ + P P PP S +P + Q L E
Sbjct: 123 KSDSSLDISSLTGRNSSSVLEECSSPSPVPPPRS-PKPKKRTQFLTEEE 170
>AC084158-1|AAK68563.2| 1256|Caenorhabditis elegans Hypothetical
protein Y69A2AR.19 protein.
Length = 1256
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -3
Query: 410 IINEIHILSKFESSTSSLMCGLTRCIRSL 324
++NEI +LS + SS+M L +C R+L
Sbjct: 421 LVNEISLLSSDSAEMSSVMAELDKCSRTL 449
>AC006619-3|AAK68253.1| 943|Caenorhabditis elegans Hypothetical
protein C46C11.1 protein.
Length = 943
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 224 RQRLDSSELSTTQP*KEHGFMYCRMVQYPATS 319
R+++ SS LSTT P ++ ++C Y ATS
Sbjct: 361 REKMSSSALSTTHPPSKYLVLHCHGGGYVATS 392
>U58742-3|AAB36855.1| 262|Caenorhabditis elegans Helix loop helix
protein 28 protein.
Length = 262
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = -3
Query: 488 DPTDCISASVSSCMETPKLFPSSI--FGIINEIHILSKFES 372
+PT CIS S +P LF +++ F + ++H ++K ++
Sbjct: 194 EPTKCISPEQSVASPSPFLFSNTLAFFNQVAQLHFIAKLQA 234
>AC024806-3|AAP13749.1| 363|Caenorhabditis elegans Serpentine
receptor, class w protein40 protein.
Length = 363
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +2
Query: 314 TSHSVILYILLSHTLGNLLKIQTY 385
TSHS++L +LS ++ NLLKI +
Sbjct: 112 TSHSMLLLAVLSSSIRNLLKISMW 135
>U43375-3|AAA83620.1| 110|Caenorhabditis elegans Hypothetical
protein K09C4.7 protein.
Length = 110
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = -3
Query: 452 CMETPKLFPSSIFGIINE 399
C+ET KLFPS+++ I N+
Sbjct: 11 CLETFKLFPSTLYNIWNQ 28
>U41011-7|AAA82290.1| 271|Caenorhabditis elegans Hypothetical
protein D2024.2 protein.
Length = 271
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +2
Query: 293 RMVQYPATSHSVILYILLSHTLGNLLKIQTYSK 391
R+ ++P + H I+ LL+HT G L ++ + K
Sbjct: 237 RIEEFPNSGHYTIMTNLLNHTSGEYLAMEKFLK 269
>U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activating
protein protein.
Length = 1439
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 352 HIRELVEDSNLLKMWISFMIPKIEDGNNFGVSIQEDTLA 468
H+ EL +S +L WIS + EDG G S+ E+ L+
Sbjct: 538 HLIELNTESEMLS-WISVLQSSSEDGIATGSSVDENELS 575
>L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical
protein C04D8.1 protein.
Length = 1317
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 352 HIRELVEDSNLLKMWISFMIPKIEDGNNFGVSIQEDTLA 468
H+ EL +S +L WIS + EDG G S+ E+ L+
Sbjct: 416 HLIELNTESEMLS-WISVLQSSSEDGIATGSSVDENELS 453
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,418,612
Number of Sequences: 27780
Number of extensions: 326607
Number of successful extensions: 1094
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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